. Altschul, Basic local alignment search tool, Belleannee et al. 2014] C. Belleannée, O. Sallou, and J. Nicolas. « Logol, pp.403-410, 1990.
DOI : 10.1016/S0022-2836(05)80360-2

. Vargas, The Hague Application to Ribosomal Frameshift Modeling, RCAM'16 -"Recent Computational Advances in Metagenomics Netherlands pressive Pattern Matching in Sequences number 8626 in LNCS. Wincker, and E. Karsenti. « Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean, pp.34-47, 2014.

. Huse, Accuracy and quality of massively parallel DNA pyrosequencing, Genome Biology, vol.8, issue.7, p.143, 2007.
DOI : 10.1186/gb-2007-8-7-r143
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323236/pdf

S. M. Huse, D. M. Welch, H. G. Morrison, M. L. Sogin, S. Lax et al., « Ironing out the wrinkles in the rare biosphere through improved OTU clustering « Longitudinal analysis of microbial interaction between humans and the indoor environment, Lax et al. 2014], pp.3451048-1052, 2010.

. Mahe, Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys, Mahe et al. 2015b] F. Mahe, T. Rognes, C. Quince, C. de Vargas, and M. Dunthorn. « Swarm v2: highly-scalable and high-resolution amplicon clustering, pp.338-345, 2015.
DOI : 10.1093/bioinformatics/btt593

T. Stoeck, D. Bass, M. Nebel, R. Christen, M. D. Jones et al., Cutadapt removes adapter sequences from highthroughput sequencing reads, Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water, pp.10-1221, 2010.

. Pearson, Improved tools for biological sequence comparison., Proceedings of the National Academy of Sciences of the USA, pp.2444-2448, 1988.
DOI : 10.1073/pnas.85.8.2444
URL : http://www.pnas.org/content/85/8/2444.full.pdf