BioVEC: A program for Biomolecule Visualization with Ellipsoidal Coarse-graining, Journal of Molecular Graphics and Modelling, vol.28, issue.2, pp.140-145, 2009. ,
DOI : 10.1016/j.jmgm.2009.05.001
URL : http://arxiv.org/pdf/0906.2397
Molecular visualization of computational biology data: A survey of surveys, EuroVis Short Papers, pp.133-137, 2017. ,
Self-assembly of a nanoscale DNA box with a controllable lid, Nature, vol.211, issue.7243, pp.45973-76, 1038. ,
DOI : 10.1038/nature07971
Genome3D: a viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome, BMC Bioinformatics, vol.11, issue.1, pp.1-444 ,
DOI : 10.1186/1471-2105-11-444
URL : http://doi.org/10.1186/1471-2105-11-444
TexMol: Interactive visual exploration of large flexible multi-component molecular complexes, Proc. Visualization, pp.243-250, 2004. ,
DNA rendering of polyhedral meshes at the nanoscale, Nature, vol.325, issue.7561, pp.441-444, 1038. ,
DOI : 10.1016/j.jim.2007.06.004
vHelix ? Free-form DNA-nanostructure design, p.2017, 2017. ,
RiboVision suite for visualization and analysis of ribosomes, Faraday Discuss., vol.9, pp.195-207, 1039. ,
DOI : 10.1371/journal.pone.0088222
Molecular Surface Abstraction, IEEE Transactions on Visualization and Computer Graphics, vol.13, issue.6, pp.1608-1615, 2007. ,
DOI : 10.1109/TVCG.2007.70578
URL : http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.304.7043&rep=rep1&type=pdf
Multi-Scale Surface Descriptors, IEEE Transactions on Visualization and Computer Graphics, vol.15, issue.6, pp.1201-1208, 2009. ,
DOI : 10.1109/TVCG.2009.168
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2873089
Coarse-grained models of protein folding: toy models or predictive tools?, Current Opinion in Structural Biology, vol.18, issue.1, pp.10-15 ,
DOI : 10.1016/j.sbi.2007.10.005
Nucleic acid visualization with UCSF Chimera, Nucleic Acids Research, vol.34, issue.4, pp.29-30, 2006. ,
DOI : 10.1093/nar/gnj031
URL : http://doi.org/10.1093/nar/gnj031
A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads, Science, vol.76, issue.6, pp.831-834 ,
DOI : 10.1128/IAI.01310-07
Rapid prototyping of 3D DNA-origami shapes with caDNAno, Nucleic Acids Research, vol.37, issue.15, pp.5001-5006, 2009. ,
DOI : 10.1093/nar/gkp436
DNA origami and the complexity of Eulerian circuits with turning costs, Natural Computing, vol.116, issue.5, pp.491-503, 2015. ,
DOI : 10.1021/ja00084a006
Visual analysis for space???time aggregation of biomolecular simulations, Faraday Discuss., vol.78, pp.167-178, 2014. ,
DOI : 10.1103/PhysRevE.78.021912
View-dependent level-of-detail abstraction for interactive atomistic visualization of biological structures, Computers & Graphics, vol.52, pp.62-71, 2015. ,
DOI : 10.1016/j.cag.2015.06.008
Visualization of complex molecular ribbon structures at interactive rates, Proceedings. Eighth International Conference on Information Visualisation, 2004. IV 2004., pp.737-7441320224, 2004. ,
DOI : 10.1109/IV.2004.1320224
VMD: Visual molecular dynamics, Journal of Molecular Graphics, vol.14, issue.1, pp.33-38, 1996. ,
DOI : 10.1016/0263-7855(96)00018-5
A Systematic Review on the Practice of Evaluating Visualization, IEEE Transactions on Visualization and Computer Graphics, vol.19, issue.12, pp.2818-2827, 2013. ,
DOI : 10.1109/TVCG.2013.126
URL : https://hal.archives-ouvertes.fr/hal-00846775
Visualization of biomolecular structures: State of the art revisited, Computer Graphics Forum, p.13072, 2017. ,
Visualization of biomolecular structures: State of the art, EuroVis State-of-the-Art Reports, pp.61-81, 2015. ,
Fast visualization of Gaussian density surfaces for molecular dynamics and particle system trajectories, EuroVis Short Papers, pp.67-71067, 2012. ,
Website: https://cando-dna-origami, 2015. ,
Empirical Studies in Information Visualization: Seven Scenarios, IEEE Transactions on Visualization and Computer Graphics, vol.18, issue.9, pp.1520-1536279, 2011. ,
DOI : 10.1109/TVCG.2011.279
URL : https://hal.archives-ouvertes.fr/hal-00932606
cellVIEW: A tool for illustrative and multi-scale rendering of large biomolecular datasets, Proc. VCBM, pp.61-70, 2015. ,
Interactive Rendering of Materials and Biological Structures on Atomic and Nanoscopic Scale, Computer Graphics Forum, vol.35, issue.5, pp.311325-1334, 2012. ,
DOI : 10.1007/s10439-007-9278-x
Spatially continuous change of abstraction in molecular visualization, IEEE BioVis Abstracts, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00781520
A Nested Model for Visualization Design and Validation, IEEE Transactions on Visualization and Computer Graphics, vol.15, issue.6, pp.921-928, 2009. ,
DOI : 10.1109/TVCG.2009.111
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.154.8119
DNA sequence-dependent deformability deduced from protein-DNA crystal complexes, Proceedings of the National Academy of Sciences of the United States of America, pp.11163-11168 ,
DOI : 10.1006/jmbi.1997.0916
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC21613/pdf
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse, Nature, vol.43, issue.7456, pp.49974-78, 1038. ,
DOI : 10.1093/sysbio/syq010
Continuous Levels-of-Detail and Visual Abstraction for Seamless Molecular Visualization, Computer Graphics Forum, vol.9, issue.1, pp.276-287, 2014. ,
DOI : 10.1186/1472-6807-9-19
Seamless Visual Abstraction of Molecular Surfaces, Spring Conference on Computer Graphics, SCCG '13, pp.107-114, 2013. ,
DOI : 10.1145/2508244.2508258
The Anatomy and Taxonomy of Protein Structure, Advances in Protein Chemistry, vol.34, issue.08, pp.167-339, 1981. ,
DOI : 10.1016/S0065-3233(08)60520-3
Folding DNA to create nanoscale shapes and patterns, Nature, vol.4, issue.7082, pp.440297-302, 1038. ,
DOI : 10.1080/07391102.1990.10507829
The thermodynamics of DNA structural motifs Annual review of biophysics and biomolecular structure, pp.415-440, 2004. ,
Micrometer-sized molecular robot changes its shape in response to signal molecules, Science Robotics, vol.1808, issue.4, pp.3735-3736, 2017. ,
DOI : 10.1038/srep02131
The PyMOL molecular graphics system, version 1.8, 2015. ,
Maestro 11: The completely reimagined allpurpose molecular modeling environment Website: https://www. schrodinger.com, p.2017, 2017. ,
Nucleic acid junctions and lattices, Journal of Theoretical Biology, vol.99, issue.2, pp.237-247, 1982. ,
DOI : 10.1016/0022-5193(82)90002-9
Poly(dAmiddle dotdT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo, Nucleic Acids Research, vol.28, issue.21, pp.4083-4089, 2000. ,
DOI : 10.1093/nar/28.21.4083
URL : https://academic.oup.com/nar/article-pdf/28/21/4083/9904792/284083.pdf
Coarse-grained models for proteins, Current Opinion in Structural Biology, vol.15, issue.2, pp.144-150, 2005. ,
DOI : 10.1016/j.sbi.2005.02.005
DNA-enhanced peroxidase activity of a DNA aptamer-hemin complex, Chemistry & Biology, vol.5, issue.9, pp.505-517, 1998. ,
DOI : 10.1016/S1074-5521(98)90006-0
Primer3???new capabilities and interfaces, Primer3?New capabilities and interfaces, pp.115-116, 2012. ,
DOI : 10.1093/nar/gks596
URL : http://doi.org/10.1093/nar/gks596
Illustrative Molecular Visualization with Continuous Abstraction, Computer Graphics Forum, vol.9, issue.19, pp.683-690, 2011. ,
DOI : 10.1109/TVCG.2006.115
URL : https://hal.archives-ouvertes.fr/hal-00781508
Designer nanoscale DNA assemblies programmed from the top down, Science, vol.21, issue.5, pp.1-1534, 2016. ,
DOI : 10.1016/j.str.2013.04.016
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5111087
GPU-accelerated visualization of protein dynamics in ribbon mode, Visualization and Data Analysis 2011, pp.1-786805, 1117. ,
DOI : 10.1117/12.872458