Protein structure and function, Biochemistry, vol.5, 2002. ,
Pfam: the protein families database, Nucleic Acids Research, vol.42, issue.D1, pp.222-230, 2014. ,
DOI : 10.1093/nar/gks1200
URL : https://hal.archives-ouvertes.fr/hal-01294685
CATH ??? a hierarchic classification of protein domain structures, Structure, vol.5, issue.8, pp.1093-1109, 1997. ,
DOI : 10.1016/S0969-2126(97)00260-8
SCOP: A structural classification of proteins database for the investigation of sequences and structures, Journal of Molecular Biology, vol.247, issue.4, pp.536-540, 1995. ,
DOI : 10.1016/S0022-2836(05)80134-2
Gene Ontology: tool for the unification of biology, Nature Genetics, vol.9, issue.1, pp.25-29, 2000. ,
DOI : 10.1091/mbc.9.12.3273
dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more, Nucleic acids research 41(D1), pp.536-544, 2013. ,
DOI : 10.1093/nar/gkq985
The InterPro protein families database: the classification resource after 15 years, Nucleic Acids Research, vol.42, issue.D1, pp.213-221, 2015. ,
DOI : 10.1093/nar/gkt961
URL : https://hal.archives-ouvertes.fr/hal-01222896
Ec-psi: Associating enzyme commission numbers with pfam domains, bioRxiv, 2015. ,
DOI : 10.1101/022343
URL : https://hal.archives-ouvertes.fr/hal-01216743
ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains, BMC Bioinformatics, vol.4, issue.4, p.107, 2017. ,
DOI : 10.1186/gb-2003-4-4-210
URL : https://hal.archives-ouvertes.fr/hal-01466842
PDBe: Protein Data Bank in Europe, Nucleic Acids Research, vol.6, issue.D1, pp.285-291, 2014. ,
DOI : 10.1021/bi00049a010
Associating Gene Ontology Terms with Pfam Protein Domains, International Conference on Bioinformatics and Biomedical Engineering, pp.127-138, 2017. ,
DOI : 10.1186/gb-2003-4-4-210
URL : https://hal.archives-ouvertes.fr/hal-01531204
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource, Nucleic Acids Research, vol.7, issue.D1, pp.483-489, 2013. ,
DOI : 10.1371/journal.pcbi.1002195
Christopher d. manning, prabhakar raghavan, and hinrich schütze: Introduction to information retrieval, 2010. ,
Editorial, ACM SIGKDD Explorations Newsletter, vol.6, issue.1, pp.1-6, 2004. ,
DOI : 10.1145/1007730.1007733
Statistical tests for differential expression in cdna microarray experiments, Genome Biology, vol.4, issue.4, p.210, 2003. ,
DOI : 10.1186/gb-2003-4-4-210
UniRef: comprehensive and non-redundant UniProt reference clusters, Bioinformatics, vol.18, issue.9, pp.1282-1288, 2007. ,
DOI : 10.1105/tpc.106.043794
GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations, Database, vol.50, pp.2710-1093, 2016. ,
DOI : 10.1016/S0092-8674(00)81054-5
Biological process annotation of proteins across the plant kingdom, Current Plant Biology, vol.1, pp.73-82, 2014. ,
DOI : 10.1016/j.cpb.2014.07.001
A large-scale evaluation of computational protein function prediction, Nature Methods, vol.143, issue.3, pp.221-227, 2013. ,
DOI : 10.1148/radiology.143.1.7063747
Automatic generation of functional annotation rules using inferred go-domain associations, ) Additional Files Additional file 1: Supplementary figures. (PDF 93 kb) Additional file 2, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01573070