Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition, 2017. ,
DOI : 10.1038/sdata.2017.93
URL : https://hal.archives-ouvertes.fr/hal-01771844
Molecular Markers, Natural History and Evolution, 2004. ,
Plankton effect on cod recruitment in the North Sea, Nature, vol.426, pp.661-664, 2003. ,
DOI : 10.1038/nature02164
Reorganization of North Atlantic marine copepod biodiversity and climate, Science, vol.296, pp.1692-1694, 2002. ,
New view of population genetics of zooplankton: RAD-seq analysis reveals population structure of the North Atlantic planktonic copepod Centropages typicus, Mol Ecol, vol.25, pp.1566-1580, 2016. ,
DNA barcoding of marine copepods: assessment of analytical approaches to species identification, PLoS Curr, vol.6, 2014. ,
Detecting selection in population trees: the Lewontin and Krakauer test extended, Genetics, vol.186, pp.241-262, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00842515
A global ocean atlas of eukaryotic genes, Nat Commun, vol.9, p.373, 2018. ,
URL : https://hal.archives-ouvertes.fr/cea-01874711
Molecular systematic of three species of Oithona (Copepoda, Cyclopoida) from the Atlantic Ocean: comparative analysis using 28S rDNA, PLoS One, vol.7, p.35861, 2012. ,
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3, Fly (Austin), vol.6, pp.80-92, 2012. ,
metaSNV: A tool for metagenomic strain level analysis, PLoS One, vol.12, p.182392, 2017. ,
The global biogeography of amino acid variants within a single SAR11 population is governed by natural selection, 2017. ,
Predicting ecological responses in a changing ocean: the effects of future climate uncertainty, Mar Biol, vol.165, p.7, 2018. ,
A holistic approach to marine eco-systems biology, PLoS Biol, vol.9, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01893669
Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms, Genetics, vol.74, pp.175-195, 1973. ,
Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, vol.25, pp.1754-1760, 2009. ,
The Sequence Alignment/Map format and SAMtools, Bioinformatics, vol.25, pp.2078-2079, 2009. ,
New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona, Mol Ecol, vol.26, pp.4467-4482, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01621969
The fragment assembly string graph, Bioinformatics, vol.21, issue.2, pp.79-85, 2005. ,
High evolutionary potential of marine zooplankton, Ecol Evol, vol.3, pp.2765-2781, 2013. ,
Paleo-perspectives on ocean acidification, Trends Ecol Evol, vol.25, pp.332-344, 2010. ,
Open science resources for the discovery and analysis of Tara Oceans data, Sci Data, vol.2, p.150023, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01253984
DiscoSnp++: de novo detection of small variants from raw unassembled read set(s) bioRxiv 209965, 2017. ,
De novo repeat classification and fragment assembly, Genome Res, vol.14, pp.1786-1796, 2004. ,
Genomic variation landscape of the human gut microbiome, Nature, vol.493, pp.45-50, 2013. ,
Reference-free detection of isolated SNPs, Nucleic Acids Res, vol.43, p.11, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01083715
The genetical structure of populations, Ann Eugen, vol.15, pp.323-354, 1951. ,
Patterns of genome size in the copepoda, Hydrobiologia, vol.417, pp.43-56, 2000. ,
The relationship between genome size, development rate, and body size in copepods, Hydrobiologia, vol.532, pp.123-137, 2005. ,