,
Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates, Appl Environ Microbiol, vol.59, pp.2465-2473, 1993. ,
Control of carbon flux to acetate excretion during growth of Escherichia coli in batch and continuous cultures, 1989. ,
, J Gen Microbiol, vol.135, pp.2875-2883
Overflow metabolism in Escherichia coli results from efficient proteome allocation, Nature, vol.528, pp.99-104, 2015. ,
Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations, Appl Environ Microbiol, vol.56, pp.1004-1011, 1990. ,
External concentration of organic acid anions and pH: key independent variables for studying how organic acids inhibit growth of bacteria in mildly acidic foods, J Food Sci, vol.74, pp.12-15, 2009. ,
Organic acid toxicity, tolerance, and production in Escherichia coli biorefining applications, Microb Cell Fact, vol.4, p.25, 2005. ,
Overcoming acetate in Escherichia coli recombinant protein fermentations, Trends Biotechnol, vol.24, pp.530-536, 2006. ,
Minimizing acetate formation in E. coli fermentations, J Ind Microbiol Biotechnol, vol.34, pp.689-700, 2007. ,
Improving acetate tolerance of Escherichia coli by rewiring its global regulator cAMP receptor protein (CRP), PLoS One, vol.8, 2013. ,
Effect of alteration of the acetic acid synthesis pathway on the fermentation pattern of Escherichia coli, Biotechnol Bioeng, vol.38, pp.1318-1324, 1991. ,
Reduction of aerobic acetate production by Escherichia coli, Appl Environ Microbiol, vol.63, pp.3205-3210, 1997. ,
Recent advances in engineering the central carbon metabolism of industrially important bacteria, Microb Cell Fact, vol.11, p.50, 2012. ,
Quantitative visualization of passive transport across bilayer lipid membranes, Proc Natl Acad Sci U S A, vol.105, pp.14277-14282, 2008. ,
pH of the cytoplasm and periplasm of Escherichia coli: rapid measurement by green fluorescent protein fluorimetry, J Bacteriol, vol.189, pp.5601-5607, 2007. ,
Transport of lactate and acetate through the energized cytoplasmic membrane of Escherichia coli, Biotechnol Bioeng, vol.47, pp.8-19, 1995. ,
Growth inhibition of Clostridium thermocellum by carboxylic acids: a mechanism based on uncoupling by weak acids, Appl Microbiol Biotechnol, vol.22, pp.53-62, 1985. ,
Effect of the activity of primary proton pumps on the growth of Escherichia coli in the presence of acetate, Microbiology, vol.57, pp.446-451, 1988. ,
Perturbation of anion balance during inhibition of growth of Escherichia coli by weak acids, J Bacteriol, vol.180, pp.767-772, 1998. ,
Another explanation for the toxicity of fermentation acids at low pH: anion accumulation versus uncoupling, J Appl Bacteriol, vol.73, pp.363-370, 1992. ,
Inhibition of Escherichia coli growth by acetic acid: A problem with methionine biosynthesis and homocysteine toxicity, Microbiology, vol.148, pp.2215-2222, 2002. ,
Phenotypic bistability in Escherichia coli's central carbon metabolism, Mol Syst Biol, vol.10, p.736, 2014. ,
Acetate fluxes in Escherichia coli are determined by the thermodynamic control of the Pta-AckA pathway, Sci Rep, vol.7, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01605965
The acetate switch, Microbiol Mol Biol Rev, vol.69, pp.12-50, 2005. ,
Physiologically relevant small phosphodonors link metabolism to signal transduction, Curr Opin Microbiol, vol.13, pp.204-209, 2010. ,
Phosphate transfer between acetate kinase and enzyme I of the bacterial phosphotransferase system, J Biol Chem, vol.261, pp.13498-13503, 1986. ,
Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli, Mol Syst Biol, vol.10, p.762, 2014. ,
Structural, kinetic and proteomic characterization of acetyl phosphatedependent bacterial protein acetylation, PLoS One, vol.9, 2014. ,
Acetyl-phosphate is a critical determinant of lysine acetylation in E. coli, Mol Cell, vol.51, pp.265-272, 2013. ,
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information, Mol Syst Biol, vol.3, p.121, 2007. ,
The effects of fermentation acids on bacterial growth, Adv Microb Physiol, vol.39, pp.205-234, 1998. ,
Physiological and molecular timing of the glucose to acetate transition in Escherichia coli, Metabolites, vol.3, pp.820-837, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02146740
Effects of mutations in acetate metabolism on high-cell-density growth of Escherichia coli, J Ind Microbiol Biotechnol, vol.24, pp.421-430, 2000. ,
Evolved cobalamin-independent methionine synthase (MetE) improves the acetate and thermal tolerance of Escherichia coli, Appl Environ Microbiol, vol.79, pp.7905-7915, 2013. ,
Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetylCoA synthetase, BMC Syst Biol, vol.4, p.166, 2010. ,
An insight into the role of phosphotransacetylase (Pta) and the acetate/acetyl-CoA node in Escherichia coli, Microb Cell Fact, vol.8, p.54, 2009. ,
The intracellular concentration of acetyl phosphate in Escherichia coli is sufficient for direct phosphorylation of two-component response regulators, J Bacteriol, vol.189, pp.5574-5581, 2007. ,
Regulation of acetate metabolism in Escherichia coli BL21 by protein N-lysine acetylation, Appl Microbiol Biotechnol, vol.99, pp.3533-3545, 2015. ,
SatP (YaaH), a succinate-acetate transporter protein in Escherichia coli, Biochem J, vol.454, pp.585-595, 2013. ,
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection, Mol Syst Biol, vol.2, 2006. ,
Flux analysis and control of the central metabolic pathways in Escherichia coli, FEMS Microbiol Rev, vol.19, pp.85-116, 1996. ,
Redistribution of metabolic fluxes in the central aerobic metabolic pathway of E. coli mutant strains with deletion of the ackA-pta and poxB pathways for the synthesis of isoamyl acetate, Biotechnol Prog, vol.21, pp.627-631, 2005. ,
Acetate accumulation through alternative metabolic pathways in ackA-ptapoxB-triple mutant in E. coli B (BL21), Biotechnol Lett, vol.32, pp.1897-1903, 2010. ,
Effect of inactivation of nuo and ackA-pta on redistribution of metabolic fluxes in Escherichia coli, Biotechnol Bioeng, vol.65, pp.291-297, 1999. ,
Methods and advances in metabolic flux analysis: a mini-review, J Ind Microbiol Biotechnol, vol.42, pp.317-325, 2015. ,
The post-transcriptional regulatory system CSR controls the balance of metabolic pools in upper glycolysis of Escherichia coli, Mol Microbiol, vol.100, pp.686-700, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-02147255
Improving metabolic flux predictions using absolute gene expression data, BMC Syst Biol, vol.6, p.73, 2012. ,
Validation of a constraint-based model of Pichia pastoris metabolism under data scarcity, BMC Syst Biol, vol.4, p.115, 2010. ,
The energetics of Escherichia coli during aerobic growth in continuous culture, Eur J Biochem, vol.67, pp.115-122, 1976. ,
Effects of carbonylcyanide-mchlorophenylhydrazone (CCCP) and acetate on Escherichia coli O157:H7 and K-12: uncoupling versus anion accumulation, FEMS Microbiol Lett, vol.151, pp.71-76, 1997. ,
Extracellular acidic pH inhibits acetate consumption by decreasing gene transcription of the tricarboxylic acid cycle and the glyoxylate shunt, J Bacteriol, vol.201, pp.410-428, 2018. ,
A new logic for DNA engineering using recombination in Escherichia coli, Nat Genet, vol.20, pp.123-128, 1998. ,
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products, Proc Natl Acad Sci U S A, vol.97, pp.6640-6645, 2000. ,
Recombineering: a homologous recombination-based method of genetic engineering, Nat Protoc, vol.4, pp.206-223, 2009. ,
E. coli genome manipulation by P1 transduction, p 1.17.1-1.17.8, Current protocols in molecular biology, 2007. ,
A synthetic growth switch based on controlled expression of RNA polymerase, Mol Syst Biol, vol.11, p.840, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01247993
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox, Nat Protoc, vol.14, pp.639-702, 2019. ,
Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies, Biophys J, vol.87, pp.2172-2186, 2004. ,
CHRR: coordinate hit-and-run with rounding for uniform sampling of constraint-based models, Bioinformatics, vol.33, pp.1741-1743, 2017. ,
A genome-wide screen for identifying all regulators of a target gene, Nucleic Acids Res, vol.41, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00857345
Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria, BMC Syst Biol, vol.4, p.55, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00784438
Inference of quantitative models of bacterial promoters from time-series reporter gene data, PLoS Comput Biol, vol.11, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01097632
An introduction to probability and statistics, 2003. ,
Permutation, parametric and bootstrap tests of hypotheses, 2005. ,