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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Naihui Zhou Yuxiang Jiang Timothy Bergquist Alexandra Lee Balint Kacsoh Alex Crocker Kimberley Lewis George Georghiou Huy Nguyen 1 Md Nafiz Hamid Larry Davis Tunca Dogan 2 Volkan Atalay Ahmet Rifaioglu Alperen Dalkıran Rengul Cetin Atalay Chengxin Zhang Rebecca Hurto Peter Freddolino Yang Zhang Prajwal Bhat Fran Supek Jose Fernandez 3 Branislava Gemovic Vladimir Perovic Radoslav Davidović 4 Neven Sumonja Nevena Veljkovic Ehsaneddin Asgari Mohammad R.K. Mofrad Giuseppe Profiti 5 Castrense Savojardo Pier Luigi Martelli Rita Casadio 5 Florian Boecker Heiko Schoof 6 Indika Kahanda Natalie Thurlby Alice Mchardy 7 Alexandre Renaux 8 Rabie Saidi 9 Julian Gough 10 Alex Freitas Magdalena Antczak Fabio Fabris Mark Wass Jie Hou Jianlin Cheng 11 Zheng Wang 12 Alfonso Romero 13 Alberto Paccanaro Haixuan Yang Tatyana Goldberg 14 Chenguang Zhao Liisa Holm Petri Törönen Alan Medlar 15 Elaine Zosa Itamar Borukhov Ilya Novikov Angela Wilkins Olivier Lichtarge 16 Po-Han Chi Wei-Cheng Tseng Michal Linial Peter Rose Christophe Dessimoz 17 Vedrana Vidulin Saso Dzeroski 18 Ian Sillitoe 19 Sayoni Das Jonathan Gill Lees David Jones Cen Wan Domenico Cozzetto Rui Fa Mateo Torres Alex Warwick Vesztrocy Jose Manuel Rodriguez Michael Tress 20 Marco Frasca Marco Notaro Giuliano Grossi Alessandro Petrini 21 Matteo Re Giorgio Valentini 21 Marco Mesiti 22 Daniel Roche 23 Jonas Reeb David Ritchie Sabeur Aridhi 24 Seyed Ziaeddin Alborzi 24 Marie-Dominique Devignes 24 da Chen Emily Koo Richard Bonneau Vladimir Gligorijević Meet Barot Hai Fang Stefano Toppo Enrico Lavezzo 25 Marco Falda Michele Berselli Silvio C.E. Tosatto 26 Marco Carraro Damiano Piovesan 26 Hafeez Ur Rehman Qizhong Mao Shanshan Zhang Slobodan Vucetic Gage Black Dane Jo Erica Suh Jonathan Dayton Dallas Larsen Ashton Omdahl Liam Mcguffin Danielle Brackenridge Patricia Babbitt Jeffrey Yunes Paolo Fontana Feng Zhang Shanfeng Zhu Ronghui You Zihan Zhang Suyang Dai Shuwei Yao Weidong Tian Renzhi Cao Caleb Chandler Miguel Amezola Devon Johnson Jia-Ming Chang 27 Wen-Hung Liao Yi-Wei Liu 28 Stefano Pascarelli Yotam Frank Robert Hoehndorf Maxat Kulmanov Imane Boudellioua Gianfranco Politano Stefano Di Carlo 29 Alfredo Benso 30 Kai Hakala Filip Ginter 31 Farrokh Mehryary Suwisa Kaewphan Jari Björne Hans Moen Martti E.E. Tolvanen Tapio Salakoski 32 Daisuke Kihara 33 Aashish Jain Tomislav Šmuc Adrian Altenhoff 34 Asa Ben-Hur 35 Burkhard Rost 14 Steven Brenner Christine Orengo 19 Constance Jeffery Giovanni Bosco Deborah Hogan Maria Martin Claire O’donovan Sean Mooney 36 Casey Greene Predrag Radivojac Iddo Friedberg
1 ISU - Iowa State University
2 European Bioinformatics Institute
3 EPM - École Polytechnique de Montréal
4 Vinča Institute of Nuclear Sciences
5 University of Bologna
6 MPIPZ - Max Planck Institute for Plant Breeding Research
7 European Virus Bioinformatics Center [Jena]
8 ULB - Université libre de Bruxelles
9 LIMOS - Laboratoire d'Informatique, de Modélisation et d'optimisation des Systèmes
10 Department of Computer Science
11 Department of Computer Science [Columbia]
12 YSPH - Yale School of Public Health
13 Departamento de Geometría y Topología
14 Tumor Biology Center
15 Centre for Nephrology [London, UK]
16 BCM - Baylor College of Medicine
17 Department of Computer Science
18 Department of Knowledge Technologies
19 Structural and Molecular Biology Department, University College London
20 CNIO - Spanish National Cancer Research Center
21 Dipartimento di Informatica
22 Dipartimento di Scienze dell'Informazione [Milano]
23 United States Naval Academy
24 CAPSID - Computational Algorithms for Protein Structures and Interactions
Inria Nancy - Grand Est, LORIA - AIS - Department of Complex Systems, Artificial Intelligence & Robotics
25 Department of Molecular Medicine
26 Universita degli Studi di Padova
27 CRG - Centro de Regulación Genómica
28 Physics Department
29 DAUIN - Dipartimento di Automatica e Informatica [Torino]
30 Polito - Politecnico di Torino = Polytechnic of Turin
31 University of Turku
32 Bioinformatics Laboratory
33 TTIC - Toyota Technological Institute at Chicago [Chicago]
34 SIB - Swiss Institute of Bioinformatics [Lausanne]
35 Department of Computer Science [Colorado State University]
36 CPIB - Centre for Plant Integrative Biology [Nothingham]
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Journal articles
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https://hal.inria.fr/hal-02393202
Contributor : Sabeur Aridhi Connect in order to contact the contributor
Submitted on : Wednesday, December 4, 2019 - 11:53:54 AM
Last modification on : Friday, January 21, 2022 - 3:12:14 AM

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LIMOS | UNIV-LORRAINE | LORIA | LORIA-AIS | INRIA | CNRS | PRES_CLERMONT | CLERMONT-AUVERGNE-INP

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Naihui Zhou, Yuxiang Jiang, Timothy Bergquist, Alexandra Lee, Balint Kacsoh, et al.. The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. Genome Biology, BioMed Central, 2019, 20 (1), ⟨10.1186/s13059-019-1835-8⟩. ⟨hal-02393202⟩

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