Adamalysins in biology and disease, The Journal of Pathology, vol.219, pp.1096-9896, 2009. ,
, The ADAMTS hyalectanase family : biological insights from diverse species, 2019.
The extracellular matrix : Tools and insights for the "omics" era, Matrix Biology : Journal of the International Society for Matrix Biology, vol.49, pp.1569-1802, 2016. ,
ADAMTS proteins as modulators of microfibril formation and function, Matrix Biology : Journal of the International Society for Matrix Biology, vol.47, pp.1569-1802 ,
Determination of the substrate repertoire of ADAMTS2, 3, and 14 significantly broadens their functions and identifies extracellular matrix organization and TGF? signaling as primary targets. FASEB journal : official publication of the Federation of American Societies for, Experimental Biology, vol.30, pp.1530-6860, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-02342452
Protease profiling of liver fibrosis reveals the ADAM metallopeptidase with thrombospondin type 1 motif, 1 as a central activator of transforming growth factor beta, Hepatology, vol.54, pp.1527-3350, 2011. ,
ADAMTSL2 mutations in geleophysic dysplasia demonstrate a role for ADAMTS-like proteins in TGF-beta bioavailability regulation, Nature Genetics, vol.40, pp.1061-4036, 2008. ,
A homozygous mutation in ADAMTSL4 causes autosomal-recessive isolated ectopia lentis, American Journal of Human Genetics, vol.84, pp.1537-6605, 2009. ,
ADAMTSL-6 Is a Novel Extracellular Matrix Protein That Binds to Fibrillin-1 and Promotes Fibrillin-1 Fibril Formation, The Journal of Biological Chemistry, vol.285, pp.21-9258, 2010. ,
The extracellular matrix modulates the hallmarks of cancer, EMBO reports, vol.15, pp.1469-3178 ,
ADAMTS proteases and cancer, Matrix Biology : Journal of the International Society for Matrix Biology, vol.44, pp.1569-1802, 2015. ,
The roles of ADAMTS metalloproteinases in tumorigenesis and metastasis, Frontiers in Bioscience, vol.16, pp.1093-4715, 2011. ,
The roles of ADAMTS in angiogenesis and cancer, Tumour Biology : The Journal of the International Society for Oncodevelopmental Biology and Medicine, vol.36, pp.1423-0380 ,
Scoring residue conservation, Proteins : Structure, Function, and Bioinformatics, vol.48, pp.1097-0134, 2002. ,
Predicting functionally important residues from sequence conservation, Bioinformatics, vol.23, issue.1, pp.1367-4803, 2007. ,
Improved tools for biological sequence comparison. Proceedings of the National Academy of Sciences of the United States of America, vol.85, pp.27-8424, 1988. ,
Basic local alignment search tool, Journal of Molecular Biology, vol.215, pp.22-2836, 1990. ,
BLAST+ : architecture and applications, BMC bioinformatics, vol.10, pp.1471-2105, 2009. ,
Clustal W and Clustal X version 2.0, Bioinformatics, vol.23, pp.1367-4811, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00206210
CLUSTAL W : improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, pp.305-1048, 1994. ,
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets, Nature Biotechnology, vol.35, pp.1546-1696 ,
Learning Automata on Protein Sequences, 2006. ,
URL : https://hal.archives-ouvertes.fr/inria-00180429
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis, Molecular Biology and Evolution, vol.17, pp.737-4038 ,
Tools and resources for identifying protein families, domains and motifs, Genome Biology, vol.3, pp.1465-6906, 2002. ,
Prediction of protein function by combining phylogenetic tree and mathematical, 2014 7th International Conference on Biomedical Engineering and Informatics 2014 7th International Conference on Biomedical Engineering and Informatics, pp.896-901, 2014. ,
Functional Classification Using Phylogenomic Inference, PLoS Computational Biology, vol.2, pp.1553-734, 2006. ,
Phylogenetic molecular function annotation, Journal of physics. Conference series, vol.180, pp.1742-6588, 12024. ,
Enzyme function less conserved than anticipated, Journal of Molecular Biology, vol.318, pp.22-2836, 2002. ,
Understanding cancer through phylogenetic analysis, Biochimica Et Biophysica Acta. Reviews on Cancer, vol.1867, pp.304-419, 2017. ,
Phylogenetic analysis of the SINA/SIAH ubiquitin E3 ligase family in Metazoa, BMC evolutionary biology, vol.17, pp.1471-2148, 2017. ,
Phylogenetic, molecular evolution and structural analyses of the WFDC1/prostate stromal protein 20 (ps20), Gene, vol.686, pp.1879-1917, 2019. ,
Reconciliation of Gene and Species Trees BioMed Research International, 2019. ,
Structure, function and evolution of multidomain proteins, Current Opinion in Structural Biology, vol.14, pp.959-440, 2004. ,
Modules, multidomain proteins and organismic complexity, The FEBS Journal, vol.272, pp.1742-4658 ,
, , 2005.
Divergence pattern of animal gene families and relationship with the Cambrian explosion, BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology, vol.23, pp.265-9247, 2001. ,
Signaling receptome : a genomic and evolutionary perspective of plasma membrane receptors involved in signal transduction. Science's STKE : signal transduction knowledge environment, vol.9, pp.1525-8882, 2003. ,
Modular Assembly of Genes and the Evolution of New Functions, Genetica, vol.118, pp.1573-6857, 2003. ,
Event inference in multidomain families with phylogenetic reconciliation, BMC Bioinformatics, vol.16, pp.1471-2105, 2015. ,
Phylogenetic Inference for Multidomain Proteins Thesis (1 er juil, 2018. ,
Simultaneous Multi-Domain-Multi-Gene Reconciliation Under the Domain-Gene-Species Reconciliation Model in ISBRA, 2019. ,
, UniProt : a worldwide hub of protein knowledge, Nucleic Acids Research, vol.47, pp.305-1048, 2019.
Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST : How Much Do We Miss ? PLOS ONE 9, pp.1932-6203, 2014. ,
Database resources of the National Center for Biotechnology Information, Nucleic Acids Research, vol.37, 2009. ,
MUSCLE : multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, pp.305-1048, 2004. ,
trimAl : a tool for automated alignment trimming in large-scale phylogenetic analyses, Bioinformatics, vol.25, issue.1, pp.1367-4803, 2009. ,
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood, Systematic Biology, vol.52, pp.1063-5157, 2003. ,
Improved gene tree error correction in the presence of horizontal gene transfer, Bioinformatics, vol.31, pp.1367-4803 ,
Flexible analysis of RNA-seq data using mixed effects models, Bioinformatics, vol.30, pp.1367-4811, 2014. ,
Data Structures and Algorithms for Disjoint Set Union Problems, ACM Comput. Surv, vol.23, pp.319-344, 1991. ,
PSICQUIC and PSISCORE : accessing and scoring molecular interactions, Nature Methods, vol.8, pp.1548-7105 ,
ScanProsite : detection of PROSITE signature matches and ProRuleassociated functional and structural residues in proteins, Nucleic Acids Research, vol.34, 2006. ,
dbSNP : the NCBI database of genetic variation, Nucleic Acids Research, vol.29, pp.1362-4962, 2001. ,
ETE 3 : Reconstruction, Analysis, and Visualization of Phylogenomic Data, Molecular Biology and Evolution, vol.33, issue.1, pp.737-4038, 2019. ,
PROBE : analysis and visualization of protein block-level evolution, Bioinformatics, vol.34, pp.1367-4811, 2018. ,
, Mus musculus, Histoire des 76 paralogues et orthologues des espèces Homo sapiens, Bos taurus, Rattus norvegicus, vol.1