L. Argaman, R. Hershberg, J. Vogel, G. Bejerano, E. Wagner et al., Novel small RNA-encoding genes in the intergenic regions of Escherichia coli, Current Biology, vol.11, issue.12, pp.941-50, 2001.
DOI : 10.1016/S0960-9822(01)00270-6

J. Vogel, V. Bartels, T. Tang, G. Churakov, J. Slagter-jager et al., RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria, Nucleic Acids Research, vol.31, issue.22, pp.316435-316478, 2003.
DOI : 10.1093/nar/gkg867

K. Wassarman, F. Repoila, C. Rosenow, G. Storz, and S. Gottesman, Identification of novel small RNAs using comparative genomics and microarrays, Genes & Development, vol.15, issue.13, pp.1637-51, 2001.
DOI : 10.1101/gad.901001

A. Huttenhofer, M. Kiefmann, S. Meier-ewert, J. O-'brien, H. Lehrach et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse, The EMBO Journal, vol.20, issue.11, pp.2943-53, 2001.
DOI : 10.1093/emboj/20.11.2943

V. Vapnik, Statistical learning theory, 1998.

V. Vapnik, Estimation of dependences based on empirical data, 1982.

B. Boser, I. Guyon, and V. Vapnik, A training algorithm for optimum margin classifiers, pp.92-1992144

C. Cortes and V. Vapnik, Support-vector networks, Machine Learning, vol.1, issue.3, pp.1-25, 1995.
DOI : 10.1007/BF00994018

Y. Sun, X. Fan, and Y. Li, Identifying splicing sites in eukaryotic RNA: support vector machine approach, Computers in Biology and Medicine, vol.33, issue.1, pp.17-29, 2003.
DOI : 10.1016/S0010-4825(02)00057-4

K. Wassarman, A. Zhang, and G. Storz, Small RNAs in Escherichia coli. Trends Microbiol, 1999.

P. Dennis, A. Omer, and T. Lowe, A guided tour: small RNA function in Archaea, Molecular Microbiology, vol.103, issue.3, 2001.
DOI : 10.1046/j.1365-2958.2001.02381.x

J. Bachellerie, J. Cavaille, and A. Huttenhofer, The expanding snoRNA world, Biochimie, vol.84, issue.8, 2002.
DOI : 10.1016/S0300-9084(02)01402-5

T. Lowe and S. Eddy, A computational screen for methylation guide snoRNAs in yeast. -Science, Feb, vol.19283, issue.5405, pp.1168-71, 1999.

E. Rivas and S. R. , Eddy Noncoding RNA gene detection using comparative sequence analysis, BMC Bioinformatics, vol.2, issue.1, p.8, 2001.
DOI : 10.1186/1471-2105-2-8

D. Gautheret and A. Lambert, Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles, Journal of Molecular Biology, vol.313, issue.5, pp.1003-1014, 2001.
DOI : 10.1006/jmbi.2001.5102

E. Rivas and S. Eddy, Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs, Bioinformatics, vol.16, issue.7, pp.583-605, 2000.
DOI : 10.1093/bioinformatics/16.7.583

J. Mccutcheon and S. Eddy, Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics, Nucleic Acids Res Jul, vol.1531, issue.14, pp.4119-4147, 2003.

T. Tang, J. Bachellerie, T. Rozhdestvensky, M. Bortolin, H. Huber et al., Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus, Proceedings of the National Academy of Sciences, vol.30, issue.4, pp.7536-7577, 2002.
DOI : 10.1093/nar/30.4.921

T. Rozhdestvensky, T. Tang, I. Tchirkova, J. Brosius, J. Bachellerie et al., Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea, Nucleic Acids Research, vol.31, issue.3, pp.869-77, 2003.
DOI : 10.1093/nar/gkg175