HAL will be down for maintenance from Friday, June 10 at 4pm through Monday, June 13 at 9am. More information
Skip to Main content Skip to Navigation
Conference papers

Computer analysis of multiple repeats in bacteria

Alexey Vitreschak 1 Laurent Noé 1 Gregory Kucherov 1
1 ADAGE - Applying discrete algorithms to genomics
INRIA Lorraine, LORIA - Laboratoire Lorrain de Recherche en Informatique et ses Applications
Abstract : Motivation: The presence of repeated sequences is a well-known feature of bacterial genomes and interpretation and classification of those repeats is an actual problem. Results: We described a method for computing multiple repeats, that is sequences that have multiple (two or more) occurrences in a genome. In order to identify multiple repeats in bacteria genomes, we apply the YASS software (Noe et Kucherov) and developed a novel algorithm for multiple repeat clusterization. Exhaustive computation and analysis of those clusters of repeated sequences in bacteria is the subject of the present work.
Document type :
Conference papers
Complete list of metadata

https://hal.inria.fr/inria-00100088
Contributor : Publications Loria Connect in order to contact the contributor
Submitted on : Tuesday, September 26, 2006 - 10:14:00 AM
Last modification on : Friday, February 4, 2022 - 3:31:00 AM

Identifiers

  • HAL Id : inria-00100088, version 1

Collections

Citation

Alexey Vitreschak, Laurent Noé, Gregory Kucherov. Computer analysis of multiple repeats in bacteria. The fourth International Conference on Bioinformatics of Genome Regulation and Structure - BGRS'2004, 2004, Novosibirsk, Russia, 5 p. ⟨inria-00100088⟩

Share

Metrics

Record views

70