Computer analysis of multiple repeats in bacteria

Alexey Vitreschak 1 Laurent Noé 1 Gregory Kucherov 1
1 ADAGE - Applying discrete algorithms to genomics
INRIA Lorraine, LORIA - Laboratoire Lorrain de Recherche en Informatique et ses Applications
Abstract : Motivation: The presence of repeated sequences is a well-known feature of bacterial genomes and interpretation and classification of those repeats is an actual problem. Results: We described a method for computing multiple repeats, that is sequences that have multiple (two or more) occurrences in a genome. In order to identify multiple repeats in bacteria genomes, we apply the YASS software (Noe et Kucherov) and developed a novel algorithm for multiple repeat clusterization. Exhaustive computation and analysis of those clusters of repeated sequences in bacteria is the subject of the present work.
Type de document :
Communication dans un congrès
The fourth International Conference on Bioinformatics of Genome Regulation and Structure - BGRS'2004, 2004, Novosibirsk, Russia, 5 p, 2004
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Soumis le : mardi 26 septembre 2006 - 10:14:00
Dernière modification le : mardi 6 mars 2018 - 17:40:55

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  • HAL Id : inria-00100088, version 1

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Alexey Vitreschak, Laurent Noé, Gregory Kucherov. Computer analysis of multiple repeats in bacteria. The fourth International Conference on Bioinformatics of Genome Regulation and Structure - BGRS'2004, 2004, Novosibirsk, Russia, 5 p, 2004. 〈inria-00100088〉

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