Finding Approximate Repetitions under Hamming Distance

Roman Kolpakov 1 Gregory Kucherov 1
1 ADAGE - Applying discrete algorithms to genomics
INRIA Lorraine, LORIA - Laboratoire Lorrain de Recherche en Informatique et ses Applications
Abstract : The problem of computing tandem repetitions with $K$ possible mismatches is studied. Two main definitions are considered, and for both of them an $O(nK\log K+S)$ algorithm is proposed ($S$ the size of the output). This improves, in particular, the bound obtained in \cite{LS93}.
Type de document :
Communication dans un congrès
F.Meyer auf der Heide. 9th European Symposium on Algorithms - ESA 2001, Aug 2001, Aarhus, Denmark, Springer, 2161, pp.170 -- 181, 2001, Lecture Notes in Computer Science
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https://hal.inria.fr/inria-00100491
Contributeur : Publications Loria <>
Soumis le : mardi 26 septembre 2006 - 14:46:13
Dernière modification le : mardi 6 mars 2018 - 17:40:58

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  • HAL Id : inria-00100491, version 1

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Roman Kolpakov, Gregory Kucherov. Finding Approximate Repetitions under Hamming Distance. F.Meyer auf der Heide. 9th European Symposium on Algorithms - ESA 2001, Aug 2001, Aarhus, Denmark, Springer, 2161, pp.170 -- 181, 2001, Lecture Notes in Computer Science. 〈inria-00100491〉

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