Issues in searching molecular sequence databases, Nature Genetics, vol.88, issue.2, pp.119-129, 1994. ,
DOI : 10.1016/0968-0004(93)90071-T
The frame-based module of the Suiseki information extraction system ? IEEE Intell, pp.14-20, 2000. ,
GIS: a biomedical text-mining system for gene information discovery, Bioinformatics, vol.20, issue.1, pp.120-121, 2004. ,
DOI : 10.1093/bioinformatics/btg369
A survey of current work in biomedical text mining, Briefings in Bioinformatics, vol.6, issue.1, pp.57-71, 2005. ,
DOI : 10.1093/bib/6.1.57
Extracting the Names of Genes and Gene Products with a Hidden Markov Model ? Proceeding of COLING, pp.201-207, 2000. ,
PubMiner: Machine Learning-Based Text Mining System for Biomedical Information Mining, Proceeding of the 11th International Conference on Artificial Intelligence: Methodology , Systems, and Applications (AIMSA), 2004. ,
DOI : 10.1007/978-3-540-30106-6_22
Toward information extraction: identifying protein names from biological papers ? PSB, pp.705-716, 1998. ,
FASTUS, Proceedings of the workshop on Human Language Technology , HLT '93, pp.383-406, 1997. ,
DOI : 10.3115/1075671.1075701
Information extraction from biomedical text, Proceedings of Pac Symposium Biocomputers, pp.541-552, 2000. ,
DOI : 10.1016/S1532-0464(03)00015-7
? Semantic web technologies for interpreting DNA microarray analyses: the MEAT system ? Proceeding of WISE'05, pp.20-22, 2005. ,
Web sémantique et mémoire d'expériences pour l'analyse du transcriptome ? Phd thesis, 2006. ,
GENIA corpus--a semantically annotated corpus for bio-textmining, Bioinformatics, vol.19, issue.Suppl 1, pp.180-182, 2003. ,
DOI : 10.1093/bioinformatics/btg1023
Using BLAST for identifying gene and protein names in journal articles, Gene, vol.259, issue.1-2, pp.245-52, 2000. ,
DOI : 10.1016/S0378-1119(00)00431-5
? W3C Resource Description framework (RDF) Model and Syntax Specification ? http://www.w3.org/TR/REC-rdf-syntax, 2001. ,
et Van Harmelen F. ? OWL Web Ontology Language Overview ? http://www.w3, 2004. ,
Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature, PLoS Biology, vol.2000, issue.11, p.309, 2004. ,
DOI : 10.1371/journal.pbio.0020309.t007
Machine Learning for Information Extraction in Genomics ??? State of the Art and Perspectives, Text Mining and its Applications. Studies in Fuzzi. and Soft Comp ,
DOI : 10.1007/978-3-540-45219-5_8
? Application de l'apprentissage à la recherche et à l'extraction d'information -Un exemple, le projet Caderige : identification d'interactions géniques ? Actes de la Journée thématique Exploration de données issues d'Internet, 2001. ,
? Toward routine automatic pathway discovery from on-line scientific text abstracts, Genome Inform. Ser. Workshop Genome Inform, vol.10, pp.104-112, 1999. ,
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data, Journal of Biomedical Informatics, vol.37, issue.1, pp.43-53, 2004. ,
DOI : 10.1016/j.jbi.2003.10.001
Probabilistic part-of-speech tagging using decision trees, Proceedings of the International Conference on New Methods in Language Processing. Manchester, 1994. ,
Information retrieval meets gene analysis ? IEEE Intelligent System (Special Issue on Intelligent Systems in Biology), pp.45-53, 2002. ,
Mining the Biomedical Literature in the Genomic Era: An Overview, Journal of Computational Biology, vol.10, issue.6, pp.821-855, 2003. ,
DOI : 10.1089/106652703322756104
? The UMLS project: making the conceptual connection between users and the information they need ? Bulletin of the, Medical Library Association, vol.81, issue.2, p.170, 1993. ,
? Mapping the Gene Ontology into the Unified Medical Language System ? Comparative and Functional Genomics, pp.354-361, 2004. ,
Representing the UMLS?? Semantic Network Using OWL, ISWC'200336] McCray A. ? An upper level ontology for the biomedical domain ? Comp Functional Genomics, pp.80-84, 1993. ,
DOI : 10.1007/978-3-540-39718-2_1
Managing enterprise applications as dynamic resources in corporate semantic webs: an application scenario for semantic web services ? In W3C Workshop on Frameworks for Semantics in Web Service, Principles and Practice of Semantic Web Reasoning at the 20th ICLP, 2004. ,
? Creating the Gene Ontology resource: design and implementation MnM: Ontology Driven Semi-Automatic and Automatic Support for Semantic Markup, Proc. of the 13th International Conference on Knowledge Engineering and Knowledge Management EKAW 2002, pp.1425-1433, 2001. ,
Extraction de relations sémantiques entre termes et enrichissement de modèles du domaine ? In IC'99 [44] Zweigenbaum P. ? MENELAS: an access system for medical records using natural language ? Comput Methods Programs Biomed, pp.79-88117, 1994. ,
? Querying the Semantic Web with the CORESE engine, Saitta eds ? Proceedings of the 16th European Conference on ,