Comparative analysis of RNA genes: the caRNAc software - Archive ouverte HAL Access content directly
Book Sections Year : 2007

Comparative analysis of RNA genes: the caRNAc software

(1, 2)
1
2

Abstract

RNA genes are ubiquitous in the cell and are involved in a number of biochemical processes. Since there is a close relationship between function and structure, software tools that predict the secondary structure of non-coding RNAs from the base sequence are very helpful. In this article, we focus our attention on the inference of conserved secondary structure for a group of homologous RNA sequences. We present the caRNAc software which enables the analysis of families of homologous sequences without prior alignment. The method relies both on comparative analysis and thermodynamic information.
Fichier principal
Vignette du fichier
comparativerna.pdf (153.91 Ko) Télécharger le fichier
Origin : Files produced by the author(s)

Dates and versions

inria-00178557 , version 1 (12-10-2007)

Identifiers

  • HAL Id : inria-00178557 , version 1

Cite

Helene Touzet. Comparative analysis of RNA genes: the caRNAc software. Nicholas Bergman. Comparative Genomics, Volume 1, Humana Press, 2007, Methods in Molecular Biology, 978-1-58829-693-1. ⟨inria-00178557⟩
122 View
320 Download

Share

Gmail Facebook Twitter LinkedIn More