O. Jaillon, Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype, Nature, vol.431, pp.946-957, 2004.
URL : https://hal.archives-ouvertes.fr/hal-00427605

J. M. Aury, Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia, Nature, vol.444, pp.171-178, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00090904

S. Maere, Modeling gene and genome duplications in eukaryotes, Proc. Natl Acad. Sci. USA, vol.102, pp.5454-5459, 2005.

G. Blanc and K. H. Wolfe, Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution, Plant Cell, vol.16, pp.1679-1691, 2004.

C. Seoighe and C. Gehring, Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome, Trends Genet, vol.20, pp.461-464, 2004.

P. E. Mcgovern, U. Hartung, V. Badler, D. L. Glusker, and L. J. Exner, The beginnings of wine making and viniculture in the anciant Near East and Egypt, Expedition, vol.39, pp.3-21, 1997.

D. B. Jaffe, Whole-genome sequence assembly for mammalian genomes: Arachne 2, Genome Res, vol.13, pp.91-96, 2003.

M. A. Lodhi, M. J. Daly, G. N. Ye, N. F. Weeden, and B. I. Reisch, A molecular marker based linkage map of Vitis, Genome, vol.38, pp.786-794, 1995.

A. Doligez, An integrated SSR map of grapevine based on five mapping populations, Theor. Appl. Genet, vol.113, pp.369-382, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02665356

J. A. Baur, Resveratrol improves health and survival of mice on a high-calorie diet, Nature, vol.444, pp.337-342, 2006.

J. A. Baur and D. A. Sinclair, Therapeutic potential of resveratrol: the in vivo evidence, Nature Rev. Drug Discov, vol.5, pp.493-506, 2006.

J. J. Mateo and M. Jimenez, Monoterpenes in grape juice and wines, J. Chromatogr. A, vol.881, pp.557-567, 2000.

S. Aubourg, A. Lecharny, and J. Bohlmann, Genomic analysis of the terpenoid synthase (AtTPS) gene family of Arabidopsis thaliana, Mol. Genet. Genomics, vol.267, pp.730-745, 2002.
URL : https://hal.archives-ouvertes.fr/hal-02683601

D. Tholl, Formation of monoterpenes in Antirrhinum majus and Clarkia breweri flowers involves heterodimeric geranyl diphosphate synthases, Plant Cell, vol.16, pp.977-992, 2004.

K. L. Adams and J. F. Wendel, Polyploidy and genome evolution in plants, Curr. Opin. Plant Biol, vol.8, pp.135-141, 2005.

C. Simillion, K. Vandepoele, M. C. Van-montagu, M. Zabeau, and Y. Van-de-peer, The hidden duplication past of Arabidopsis thaliana, Proc. Natl Acad. Sci. USA, vol.99, pp.13627-13632, 2002.

J. E. Bowers, B. A. Chapman, J. Rong, and A. H. Paterson, Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events, Nature, vol.422, pp.433-438, 2003.

T. J. Vision, D. G. Brown, and S. D. Tanksley, The origins of genomic duplications in Arabidopsis, Science, vol.290, pp.2114-2117, 2000.

G. Blanc, K. Hokamp, and K. H. Wolfe, A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome, Genome Res, vol.13, pp.137-144, 2003.

K. H. Wolfe, M. Gouy, Y. W. Yang, P. M. Sharp, and W. H. Li, Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data, Proc. Natl Acad. Sci. USA, vol.86, pp.6201-6205, 1989.
URL : https://hal.archives-ouvertes.fr/hal-00698329

P. R. Crane, E. M. Friis, and K. R. Pedersen, The origin and early diversification of angiosperms, Nature, vol.374, pp.27-33, 1995.

Y. Eshed and D. Zamir, An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yieldassociated QTL, Genetics, vol.141, pp.1147-1162, 1995.

K. L. Howe, T. Chothia, and R. Durbin, GAZE: a generic framework for the integration of gene-prediction data by dynamic programming, Genome Res, vol.12, pp.1418-1427, 2002.

, Author Information The final assembly and annotation are deposited in the EMBL/ Genbank/DDBJ databases under accession numbers CU459218-CU462737 (for all scaffolds) and CU462738-CU462772 (for chromosome reconstitutions and unanchored scaffolds). An annotation browser and further information on the

, Alain Billault 1 , Béatrice Segurens 1 , Michel Gouyvenoux 1 , Edgardo Ugarte 1 , Federica Cattonaro 2 , Véronique Anthouard 1 , Virginie Vico 1 , Cristian Del Fabbro 2,3 , Michaël Alaux 7 , Gabriele Di Gaspero 2,5 ,Vincent Dumas 8 , Nicoletta Felice 2,5 , Sophie Paillard 4 , Irena Juman 2,5 , Marco Moroldo 4 , Simone Scalabrin 2,3 , Aurélie Canaguier 4 , Isabelle Le Clainche 4 , Giorgio Malacrida 6, Istituto di Genomica Applicata, vol.15, issue.2, p.91057, 2009.

, Place des Terrasses, 91034 Evry Cedex, France. 8 UMR INRA 1131, vol.208, p.68021

, via Celoria, vol.26, p.11, 20133.

. Istituto-tecnologie-biomediche, Diversité et Adaptation des Plantes Cultivées, 2 Place Pierre Viala, 34060 Montpellier Cedex 1, France. 13 UMR INRA 1098, IRD-Montpellier SupAgro-CIRAD, Développement et Amélioration des Plantes, 2 Place Pierre Viala, Consiglio Nazionale delle Ricerche, via Amendola 122/ D, 70125 Bari, Italy. 12 UMR INRA 1097, vol.34060

A. F. Adam-blondon, Construction and characterization of BAC libraries from major grapevine cultivars, Theor. Appl. Genet, vol.110, pp.1363-1371, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02681365

C. Soderlund, S. Humphray, A. Dunham, and L. French, Contigs built with fingerprints, markers, and FPC V4.7, Genome Res, vol.10, pp.1772-1787, 2000.

D. Lamoureux, Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome, Theor. Appl. Genet, vol.113, pp.344-356, 2006.
URL : https://hal.archives-ouvertes.fr/inria-00180148

W. J. Kent, BLAT-the BLAST-like alignment tool, Genome Res, vol.12, pp.656-664, 2002.

A. L. Price, N. C. Jones, and P. A. Pevzner, De novo identification of repeat families in large genomes, Bioinformatics, vol.21, pp.351-358, 2005.

H. Roest-crollius, Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence, Nature Genet, vol.25, pp.235-238, 2000.

O. Jaillon, Genome-wide analyses based on comparative genomics, Cold Spring Harb. Symp. Quant. Biol, vol.68, pp.275-282, 2003.

E. Birney, M. Clamp, R. Durbin, and G. Genewise, Genome Res, vol.14, pp.988-995, 2004.

A. Bairoch, The Universal Protein Resource (UniProt), Nucleic Acids Res, vol.33, pp.154-159, 2005.

G. Parra, E. Blanco, R. Guigo, and . Geneid-in-drosophila, Genome Res, vol.10, pp.511-515, 2000.

I. Korf, Gene finding in novel genomes, BMC Bioinformatics, vol.5, p.59, 2004.

T. F. Smith and M. S. Waterman, Identification of common molecular subsequences, J. Mol. Biol, vol.147, pp.195-197, 1981.