Logol : Modelling evolving sequence families through a dedicated constrained string language

Catherine Belleannée 1 Jacques Nicolas 1
1 SYMBIOSE - Biological systems and models, bioinformatics and sequences
IRISA - Institut de Recherche en Informatique et Systèmes Aléatoires, Inria Rennes – Bretagne Atlantique
Abstract : The report reviews the key milestones that have been reached so far in applying formal languages to the analysis of genomic sequences. Then it introduces a new modelling language, Logol, that aims at expressing more easily complex structures on genomic sequences. It is based on a development of String Variable Grammars, a formal framework proposed by D. Searls.
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https://hal.inria.fr/inria-00186568
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Submitted on : Thursday, November 15, 2007 - 9:02:31 AM
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  • HAL Id : inria-00186568, version 3

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Catherine Belleannée, Jacques Nicolas. Logol : Modelling evolving sequence families through a dedicated constrained string language. [Research Report] RR-6350, INRIA. 2007, pp.19. ⟨inria-00186568v3⟩

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