Logol : Modelling evolving sequence families through a dedicated constrained string language

Catherine Belleannée 1 Jacques Nicolas 1
1 SYMBIOSE - Biological systems and models, bioinformatics and sequences
IRISA - Institut de Recherche en Informatique et Systèmes Aléatoires, Inria Rennes – Bretagne Atlantique
Abstract : The report reviews the key milestones that have been reached so far in applying formal languages to the analysis of genomic sequences. Then it introduces a new modelling language, Logol, that aims at expressing more easily complex structures on genomic sequences. It is based on a development of String Variable Grammars, a formal framework proposed by D. Searls.
Complete list of metadatas

https://hal.inria.fr/inria-00186568
Contributor : Rapport de Recherche Inria <>
Submitted on : Tuesday, November 13, 2007 - 2:58:48 PM
Last modification on : Thursday, November 15, 2018 - 11:57:19 AM
Long-term archiving on : Friday, November 25, 2016 - 6:20:51 PM

File

RR-6350.pdf
Files produced by the author(s)

Identifiers

  • HAL Id : inria-00186568, version 2

Collections

Citation

Catherine Belleannée, Jacques Nicolas. Logol : Modelling evolving sequence families through a dedicated constrained string language. [Research Report] RR-6350, 2007, pp.19. ⟨inria-00186568v2⟩

Share

Metrics

Record views

83

Files downloads

89