SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database, Bioinformatics, vol.17, issue.Suppl 1, pp.1-9, 2001. ,
DOI : 10.1093/bioinformatics/17.suppl_1.S13
ParadisEO: A Framework for the Reusable Design of Parallel and Distributed Metaheuristics, Journal of Heuristics, vol.10, issue.3, pp.357-380, 2004. ,
DOI : 10.1023/B:HEUR.0000026900.92269.ec
Peptide Sequencing via Tandem Mass Spectrometry, Journal of Computational Biology, vol.6, issue.3-4, pp.327-342, 1999. ,
DOI : 10.1089/106652799318300
PepNovo:?? De Novo Peptide Sequencing via Probabilistic Network Modeling, Analytical Chemistry, vol.77, issue.4, pp.964-973, 2005. ,
DOI : 10.1021/ac048788h
Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection, Electrophoresis, vol.157, issue.18, pp.3535-3550, 1999. ,
DOI : 10.1002/(SICI)1522-2683(19991201)20:18<3535::AID-ELPS3535>3.0.CO;2-J
Amino acid substitution matrices from protein blocks., Proceedings of the National Academy of Sciences, pp.10915-10919, 1992. ,
DOI : 10.1073/pnas.89.22.10915
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC50453/pdf
Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data, Bioinformatics, vol.20, issue.14, pp.2296-2304, 2004. ,
DOI : 10.1093/bioinformatics/bth242
Adaptation in Natural and Artificial Systems, 1975. ,
OLAV-PMF:?? A Novel Scoring Scheme for High-Throughput Peptide Mass Fingerprinting, Journal of Proteome Research, vol.3, issue.1, pp.55-60, 2004. ,
DOI : 10.1021/pr034055m
Constrained de novo peptide identification via multi-objective optimization, International Parallel and Distributed Processing Symposium, p.191, 2004. ,
Algorithm for accurate similarity measurements of peptide mass fingerprints and its application, Journal of the American Society for Mass Spectrometry, vol.1, issue.1, pp.13-21, 2005. ,
DOI : 10.1016/j.jasms.2004.09.013
Rapid Calculation of Isotope Distribtion, Analytical Chemistry, vol.67, issue.15, pp.2698-2704, 1995. ,
High-Throughput Identification of Proteins and Unanticipated Sequence Modifications Using a Mass-Based Alignment Algorithm for MS/MS de Novo Sequencing Results, Analytical Chemistry, vol.76, issue.8, pp.2220-2230, 2004. ,
DOI : 10.1021/ac035258x