Chromosome aberrations in solid tumors, Nature Genetics, vol.34, issue.4, pp.369-376, 2003. ,
DOI : 10.1038/ng1215
Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements, Human Molecular Genetics, vol.12, issue.17, pp.2201-2208, 2003. ,
DOI : 10.1093/hmg/ddg223
Algorithms for the optimal identification of segment neighborhoods, Bulletin of Mathematical Biology, vol.25, issue.1, pp.39-54, 1989. ,
DOI : 10.1007/BF02458835
Hotspots of mammalian chromosomal evolution, Genome Biology, vol.5, issue.4, p.23, 2004. ,
DOI : 10.1186/gb-2004-5-4-r23
Applied dynamic programming, 1962. ,
DOI : 10.1515/9781400874651
Techniques for multi-genome synteny analysis to overcome assembly limitations, Genome Inform, vol.17, issue.2, pp.152-161, 2006. ,
Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes, Genome Research, vol.14, issue.4, pp.507-516, 2004. ,
DOI : 10.1101/gr.1975204
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages, Genome Research, vol.15, issue.1, pp.98-110, 2005. ,
DOI : 10.1101/gr.3002305
Fast identification and statistical evaluation of segmental homologies in comparative maps, Bioinformatics, vol.19, issue.Suppl 1, pp.74-80, 2003. ,
DOI : 10.1093/bioinformatics/btg1008
Chromosomal evolution: Inversions: the chicken or the egg?, Heredity, vol.146, issue.5, pp.479-480, 2007. ,
DOI : 10.1073/pnas.0509683103
Algorithms for the Extraction of Synteny Blocks from Comparative Maps, WABI, LCNS, pp.277-288, 2007. ,
DOI : 10.1007/978-3-540-74126-8_26
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements, Genome Research, vol.14, issue.7, pp.1394-1403, 2004. ,
DOI : 10.1101/gr.2289704
Human/Mouse Homology Relationships, Genomics, vol.33, issue.3, pp.337-351, 1996. ,
DOI : 10.1006/geno.1996.0209
Structural Dynamics of Eukaryotic Chromosome Evolution, Science, vol.301, issue.5634, pp.793-797, 2003. ,
DOI : 10.1126/science.1086132
DAGchainer: a tool for mining segmental genome duplications and synteny, Bioinformatics, vol.20, issue.18, pp.3643-3646, 2004. ,
DOI : 10.1093/bioinformatics/bth397
LineUp: Statistical Detection of Chromosomal Homology With Application to Plant Comparative Genomics, Genome Research, vol.13, issue.5, pp.999-1010, 2003. ,
DOI : 10.1101/gr.814403
Recurring genomic breaks in independent lineages support genomic fragility, BMC Evolutionary Biology, vol.6, issue.1, p.90, 2006. ,
DOI : 10.1186/1471-2148-6-90
Ensembl 2007, Nucleic Acids Research, vol.35, issue.Database, pp.610-617, 2007. ,
DOI : 10.1093/nar/gkl996
URL : http://doi.org/10.1093/nar/gkl996
Breakpoint analysis of the pericentric inversion between chimpanzee chromosome 10 and the homologous chromosome 12 in humans, Cytogenetic and Genome Research, vol.108, issue.1-3, pp.1-391, 2005. ,
DOI : 10.1159/000080806
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes, Proceedings of the National Academy of Sciences, vol.100, issue.20, pp.11484-11489, 2003. ,
DOI : 10.1073/pnas.1932072100
The UCSC genome browser database: update 2007, Nucleic Acids Research, vol.35, issue.Database, pp.668-673, 2007. ,
DOI : 10.1093/nar/gkl928
Reconstructing contiguous regions of an ancestral genome, Genome Research, vol.16, issue.12, pp.1557-1565, 2006. ,
DOI : 10.1101/gr.5383506
Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps, Science, vol.309, issue.5734, pp.309613-617, 2005. ,
DOI : 10.1126/science.1111387
Lengths of chromosomal segments conserved since divergence of man and mouse., Proceedings of the National Academy of Sciences, vol.81, issue.3, pp.814-818, 1984. ,
DOI : 10.1073/pnas.81.3.814
SynBrowse: a synteny browser for comparative sequence analysis, Bioinformatics, vol.21, issue.17, pp.3461-3468, 2005. ,
DOI : 10.1093/bioinformatics/bti555
Genome Rearrangements in Mammalian Evolution: Lessons From Human and Mouse Genomes, Genome Research, vol.13, issue.1, pp.37-45, 2003. ,
DOI : 10.1101/gr.757503
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution, Proceedings of the National Academy of Sciences, vol.100, issue.13, pp.7672-7677, 2003. ,
DOI : 10.1073/pnas.1330369100
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC164646
Principles of Genome Evolution in the Drosophila melanogaster Species Group, PLoS Biology, vol.113, issue.1987, p.152, 2007. ,
DOI : 10.1371/journal.pbio.0050152.st008
Chromosomal rearrangements and speciation, Trends in Ecology & Evolution, vol.16, issue.7, pp.351-358, 2001. ,
DOI : 10.1016/S0169-5347(01)02187-5
Evolutionary breakpoints are co-localized with fragile sites and intrachromosomal telomeric sequences in primates, Cytogenetic and Genome Research, vol.108, issue.1-3, pp.1-3234, 2005. ,
DOI : 10.1159/000080822
Human-Mouse Alignments with BLASTZ, Genome Research, vol.13, issue.1, pp.103-107, 2003. ,
DOI : 10.1101/gr.809403
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC430961
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms, BMC Bioinformatics, vol.8, issue.1, p.82, 2007. ,
DOI : 10.1186/1471-2105-8-82
Genome architecture, rearrangements and genomic disorders, Trends in Genetics, vol.18, issue.2, pp.74-82, 2002. ,
DOI : 10.1016/S0168-9525(02)02592-1
An Integrative Method for Accurate Comparative Genome Mapping, PLoS Computational Biology, vol.34, issue.8, p.75, 2006. ,
DOI : 10.1371/journal.pcbi.0020075.st005
Genomic features in the breakpoint regions between syntenic blocks, Bioinformatics, vol.20, issue.Suppl 1, pp.318-325, 2004. ,
DOI : 10.1093/bioinformatics/bth934
Alpes 655, avenue de l'Europe -38334 Montbonnot Saint-Ismier (France) Unité de recherche INRIA Futurs : Parc Club Orsay Université -ZAC des Vignes 4 ,
Technopôle de Nancy-Brabois -Campus scientifique 615, rue du Jardin Botanique -BP 101 -54602 Villers-lès-Nancy Cedex (France) Unité de recherche INRIA Rennes : IRISA, Campus universitaire de Beaulieu -35042 Rennes Cedex (France) Unité de recherche INRIA Rocquencourt : Domaine de Voluceau -Rocquencourt -BP 105 -78153 Le Chesnay Cedex (France) Unité de recherche, 2004. ,