D. Benson, I. Karsch-mizrachi, D. Lipman, J. Ostell, D. Wheeler et al., GenBank, Nucleic Acids Research, vol.35, issue.Database, pp.21-25, 2007.
DOI : 10.1093/nar/gkl986

P. Peterlongo, L. Noé, D. Lavenier, G. Georges, J. Jacques et al., Protein Similarity Search with Subset Seeds on a Dedicated Reconfigurable Hardware, Parallel Bio-Computing, 2007.
DOI : 10.1007/978-3-540-68111-3_131
URL : https://hal.archives-ouvertes.fr/inria-00178325

W. Liu, B. Schmidt, G. Voss, A. Schroder, and M. Wolfgang, Bio-sequence database scanning on a GPU, International Workshop on High Performance Computational Biology, 2006.

W. Liu, B. Schmidt, G. Voss, and W. Muller-wittig, GPU-ClustalW: Using Graphics Hardware to Accelerate Multiple Sequence Alignment, LNCS, vol.4297, pp.363-374, 2006.
DOI : 10.1007/11945918_37

D. Lavenier, L. Xinchun, and G. Georges, Seed-based genomic sequence comparison using a FPGA/FLASH accelerator, 2006 IEEE International Conference on Field Programmable Technology, 2006.
DOI : 10.1109/FPT.2006.270389
URL : https://hal.archives-ouvertes.fr/hal-00179994

D. Lavenier, Fine-Grained Parallelism for Genomic Computation, SIAM Conf. on Parallel Processing for Scientific Computing, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00179996

M. Cameron, H. E. Williams, and A. Cannane, Improved gapped alignment in BLAST, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.1, issue.3, 2004.
DOI : 10.1109/TCBB.2004.32

E. Darling, L. Carey, and W. Feng, The design, implementation, and evaluation of mpiBLAST, 4th International Conference on Linux Clusters, 2003.

W. J. Kent, BLAT---The BLAST-Like Alignment Tool, Genome Research, vol.12, issue.4, pp.656-664, 2002.
DOI : 10.1101/gr.229202

S. Altschul, T. Madden, A. Schaffer, J. Zhang, Z. Zhang et al., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997.
DOI : 10.1093/nar/25.17.3389

S. Altschul, W. Gish, W. Miller, E. W. Myers, and D. Lipman, Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-410, 1990.
DOI : 10.1016/S0022-2836(05)80360-2

T. F. Smith and M. S. Waterman, Identification of common molecular subsequences, Journal of Molecular Biology, vol.147, issue.1, pp.195-202, 1981.
DOI : 10.1016/0022-2836(81)90087-5