GEO EXPORTER : a tools to automate publishing of microarray data to Gene Expression Omnibus

Abstract : current solutions do not allow automatic publication of microarray experiment results from a microarray data management system to one of the public repositories (Gene Expression Omnibus, ArrayExpress). The end-user is generally involved in various steps of the process which results in low productivity. We have developed a software which allows validating, extraction and automatic publication of microarray data stored in BASE (BioArray Software Environment), a wildly used open source microarray data management system, to Gene Expression Omnibus a reference microarray data repository. The code written in PHP is especially modularized to allow a quick adaptation to any microarray data management system which could be access by SQL.
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https://hal.inria.fr/inria-00329898
Contributor : Francois Moreews <>
Submitted on : Monday, October 13, 2008 - 3:42:04 PM
Last modification on : Friday, November 16, 2018 - 1:22:18 AM

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  • HAL Id : inria-00329898, version 1

Citation

Francois Moreews. GEO EXPORTER : a tools to automate publishing of microarray data to Gene Expression Omnibus. ISMB 2008, The International Society for Computational Biology, Jul 2008, Toronto, Canada. ⟨inria-00329898⟩

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