GEO EXPORTER : a tools to automate publishing of microarray data to Gene Expression Omnibus - Archive ouverte HAL Access content directly
Conference Papers Year : 2008

GEO EXPORTER : a tools to automate publishing of microarray data to Gene Expression Omnibus

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Abstract

current solutions do not allow automatic publication of microarray experiment results from a microarray data management system to one of the public repositories (Gene Expression Omnibus, ArrayExpress). The end-user is generally involved in various steps of the process which results in low productivity. We have developed a software which allows validating, extraction and automatic publication of microarray data stored in BASE (BioArray Software Environment), a wildly used open source microarray data management system, to Gene Expression Omnibus a reference microarray data repository. The code written in PHP is especially modularized to allow a quick adaptation to any microarray data management system which could be access by SQL.
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Dates and versions

inria-00329898 , version 1 (13-10-2008)

Identifiers

  • HAL Id : inria-00329898 , version 1
  • PRODINRA : 250385

Cite

François Moreews. GEO EXPORTER : a tools to automate publishing of microarray data to Gene Expression Omnibus. ISMB 2008, The International Society for Computational Biology, Jul 2008, Toronto, Canada. ⟨inria-00329898⟩
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