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Reports (Research Report) Year : 2008

Parallel Reconfigurable Operator for Genomic Sequence Comparison: Architecture and Performance Analyses

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Abstract

This document describes a parallel genomic sequence comparison operator for reconfigurable platforms. It has been implemented for speeding up the time consuming parts of the IRISA-TBLASTN program designed for comparing full genomes with large protein banks. Speed-up ranging from 25 to 200 has been measured on real genomic data.
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inria-00348482 , version 1 (23-12-2008)

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  • HAL Id : inria-00348482 , version 1

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Alexandre Cornu, Francois Dussaugey, Dominique Lavenier. Parallel Reconfigurable Operator for Genomic Sequence Comparison: Architecture and Performance Analyses. [Research Report] RR-6776, INRIA. 2008. ⟨inria-00348482⟩
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