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Protein Threading

Guillaume Collet 1 Rumen Andonov 1 Nicola Yanev 1 Jean-François Gibrat 2 
1 SYMBIOSE - Biological systems and models, bioinformatics and sequences
IRISA - Institut de Recherche en Informatique et Systèmes Aléatoires, Inria Rennes – Bretagne Atlantique
Abstract : This paper describes a new algorithm that expands upon algorithms proposed in previous works to allow implementation of local sequence – structure alignments for the protein threading problem. This allows threading methods to cover the whole spectrum of alignment types needed to analyze homologous proteins.
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Submitted on : Wednesday, September 2, 2009 - 1:11:53 PM
Last modification on : Monday, November 7, 2022 - 12:10:04 PM
Long-term archiving on: : Tuesday, June 15, 2010 - 11:04:50 PM


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  • HAL Id : inria-00412642, version 1


Guillaume Collet, Rumen Andonov, Nicola Yanev, Jean-François Gibrat. Protein Threading. 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, Jun 2009, Paris, France. ⟨inria-00412642⟩



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