Protein Threading

Guillaume Collet 1 Rumen Andonov 1 Nicola Yanev 1 Jean-François Gibrat 2
1 SYMBIOSE - Biological systems and models, bioinformatics and sequences
IRISA - Institut de Recherche en Informatique et Systèmes Aléatoires, Inria Rennes – Bretagne Atlantique
Abstract : This paper describes a new algorithm that expands upon algorithms proposed in previous works to allow implementation of local sequence – structure alignments for the protein threading problem. This allows threading methods to cover the whole spectrum of alignment types needed to analyze homologous proteins.
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https://hal.inria.fr/inria-00412642
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Submitted on : Wednesday, September 2, 2009 - 1:11:53 PM
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Guillaume Collet, Rumen Andonov, Nicola Yanev, Jean-François Gibrat. Protein Threading. 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, Jun 2009, Paris, France. ⟨inria-00412642⟩

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