In this paper, we present a parallel implementation of a 1024 point Fast Fourier Transform (FFT) operating at subthreshold voltage, which is below the voltage that turns the transistors on and off. Even though the transistors are not actually switching as usual in this region, they are able to complete the computation by modulating the leakage current that passes through them, resulting in a 20-100x decrease in power consumption. Our hybrid FFT design partitions a sequential butterfly FFT architecture into two regions, namely memory banks and processing elements, such that the former runs at superthreshold and the latter in the subthreshold voltage region. For a given throughput, the number of parallel processing units and their supply voltage is determined such that the overall power consumption of the design is minimized. For a 1024 point FFT operation, our parallel design is able to deliver the same throughput as a serial design, while consuming 65% less power. We study the effectiveness of this method for a variable throughput application such as a sensor node switching between a low throughput and high throughput mode, e.g. when sensing an interesting event. We compare our method with other methods used for throughput scaling such as voltage scaling and clock scaling and find that our scaling method will last up to three times longer on battery power.