Genome evolution and adaptation in a long-term experiment with escherichia coli, Nature, vol.461, pp.1243-1247, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00435992
Assembly free comparative genomics of short-read sequence data discovers the needles in the haystack, Molecular Ecology, vol.53, issue.Suppl. 1, pp.147-161, 2010. ,
DOI : 10.1111/j.1365-294X.2009.04484.x
An estimate of unique DNA sequence heterozygosity in the human genome, Human Genetics, vol.36, issue.3, pp.201-205, 1985. ,
DOI : 10.1007/BF00293024
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, Journal of Molecular Evolution, vol.206, issue.5, Nov., pp.111-120, 1980. ,
DOI : 10.1007/BF01731581
Mapping short DNA sequencing reads and calling variants using mapping quality scores, Genome Research, vol.18, issue.11, pp.1851-1858, 2008. ,
DOI : 10.1101/gr.078212.108
De novo assembly of human genomes with massively parallel short read sequencing, Genome Research, vol.20, issue.2, pp.265-272, 2010. ,
DOI : 10.1101/gr.097261.109
An Eulerian path approach to DNA fragment assembly, Proc. Natl. Acad. Sci, pp.9748-9753, 2001. ,
DOI : 10.1073/pnas.171285098
Calling SNPs without a reference sequence, BMC Bioinformatics, vol.11, issue.1, p.130, 2010. ,
DOI : 10.1186/1471-2105-11-130
MetaSim???A Sequencing Simulator for Genomics and Metagenomics, PLoS ONE, vol.13, issue.7, p.3373, 2008. ,
DOI : 10.1371/journal.pone.0003373.s002
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs, Genome Research, vol.18, issue.5, pp.821-829, 2008. ,
DOI : 10.1101/gr.074492.107