E. M. Marcotte, P. Pellegrini, M. J. Thompson, T. O. Yeates, and D. Eisenberg, A combined algorithm for genome-wide prediction of protein function, Nature, vol.402, pp.83-86, 1999.

D. Eisenberg, E. M. Marcotte, I. Xenarios, and T. O. Yeates, Protein function in the post-genomic era, Nature, vol.405, issue.6788, pp.823-826, 2000.
DOI : 10.1038/35015694

R. B. Russell, F. Alber, P. Aloy, F. P. Davis, D. Korkin et al., A structural perspective on protein???protein interactions, Current Opinion in Structural Biology, vol.14, issue.3, pp.313-324, 2004.
DOI : 10.1016/j.sbi.2004.04.006

P. Aloy, M. Pichaud, and R. B. Russell, Protein complexes: structure prediction challenges for the 21st century, Current Opinion in Structural Biology, vol.15, issue.1, pp.15-22, 2005.
DOI : 10.1016/j.sbi.2005.01.012

P. Aloy and R. B. Russell, Structural systems biology: modelling protein interactions, Nature Reviews Molecular Cell Biology, vol.3, issue.3, pp.188-197, 2006.
DOI : 10.1038/nrm1859

S. J. Wodak and J. Janin, Computer analysis of protein-protein interaction, Journal of Molecular Biology, vol.124, issue.2, pp.323-342, 1978.
DOI : 10.1016/0022-2836(78)90302-9

D. W. Ritchie, Recent Progress and Future Directions in Protein-Protein Docking, Current Protein & Peptide Science, vol.9, issue.1, pp.1-15, 2008.
DOI : 10.2174/138920308783565741
URL : https://hal.archives-ouvertes.fr/inria-00434268

C. J. Camacho, D. W. Gatchell, S. R. Kimura, and S. Vajda, Scoring docked conformations generated by rigid-body protein-protein docking, Proteins: Structure, Function, and Genetics, vol.96, issue.3, pp.525-537, 2000.
DOI : 10.1002/1097-0134(20000815)40:3<525::AID-PROT190>3.0.CO;2-F

L. Li, R. Chen, and Z. Weng, RDOCK: Refinement of rigid-body protein docking predictions, Proteins: Structure, Function, and Genetics, vol.288, issue.3, pp.693-707, 2003.
DOI : 10.1002/prot.10460

C. Zhang, S. Liu, and Y. Zhou, Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function, Proteins: Structure, Function, and Bioinformatics, vol.53, issue.2, pp.314-318, 2005.
DOI : 10.1002/prot.20576

R. Chen, L. Li, and Z. Weng, ZDOCK: An initial-stage protein-docking algorithm, Proteins: Structure, Function, and Genetics, vol.162, issue.1, pp.80-87, 2003.
DOI : 10.1002/prot.10389
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.522.5164

S. R. Comeau, D. W. Gatchell, S. Vajda, and C. J. Camacho, ClusPro: a fully automated algorithm for protein-protein docking, Nucleic Acids Research, vol.32, issue.Web Server, pp.96-99, 2004.
DOI : 10.1093/nar/gkh354

D. Schneidman-duhovny, Y. Inbar, H. J. Nussinov, and . Wolfson, PatchDock and SymmDock: servers for rigid and symmetric docking, Nucleic Acids Research, vol.33, issue.Web Server, pp.363-367, 2005.
DOI : 10.1093/nar/gki481

A. Tovchigrechko and I. A. Vakser, GRAMM-X public web server for protein-protein docking, Nucleic Acids Research, vol.34, issue.Web Server, pp.310-314, 2006.
DOI : 10.1093/nar/gkl206

S. Lyskov and J. J. Gray, The RosettaDock server for local protein-protein docking, Nucleic Acids Research, vol.36, issue.Web Server, pp.233-238, 2008.
DOI : 10.1093/nar/gkn216

E. Katchalski-katzir, I. Shariv, M. Eisenstein, A. A. Friesem, and C. Aflalo, Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques., Proceedings of the National Academy of Science, pp.2195-2199, 1992.
DOI : 10.1073/pnas.89.6.2195

L. C. Biedenharn and J. C. Louck, Angular Momentum in Quantum Physics, 1981.
DOI : 10.1017/CBO9780511759888

D. W. Ritchie, High-order analytic translation matrix elements for real-space six-dimensional polar Fourier correlations, Journal of Applied Crystallography, vol.38, issue.5, pp.808-818, 2005.
DOI : 10.1107/S002188980502474X
URL : https://hal.archives-ouvertes.fr/inria-00434270

D. W. Ritchie and G. J. Kemp, Protein docking using spherical polar Fourier correlations, Proteins: Structure, Function, and Genetics, vol.3, issue.2, pp.178-194, 2000.
DOI : 10.1002/(SICI)1097-0134(20000501)39:2<178::AID-PROT8>3.0.CO;2-6
URL : https://hal.archives-ouvertes.fr/inria-00434273

D. W. Ritchie, D. Kozakov, and S. Vajda, Accelerating protein-protein docking correlations using a sixdimensional analytic FFT generating function, Bioinformatics, vol.24, issue.4, pp.810-823, 2008.