R. Andonov, N. Malod-dognin, and N. Yanev, Maximum Contact Map Overlap Revisited, Journal of Computational Biology, vol.18, issue.1, pp.1-15, 2011.
DOI : 10.1089/cmb.2009.0196
URL : https://hal.archives-ouvertes.fr/inria-00536624

R. Andonov, N. Yanev, and N. Malod-dognin, An Efficient Lagrangian Relaxation for the Contact Map Overlap Problem, WABI '08: Proc. of the 8th Int. Workshop on Algorithms in Bioinformatics, pp.162-173, 2008.
DOI : 10.1007/978-3-540-87361-7_14
URL : https://hal.archives-ouvertes.fr/inria-00327135

A. Caprara, R. Carr, S. Israil, G. Lancia, and B. Walenz, 1001 Optimal PDB Structure Alignments: Integer Programming Methods for Finding the Maximum Contact Map Overlap, Journal of Computational Biology, vol.11, issue.1, pp.27-52, 2004.
DOI : 10.1089/106652704773416876

A. Godzik, The structural alignment between two proteins: Is there a unique answer?, Protein Science, vol.221, issue.7, pp.1325-1338, 1996.
DOI : 10.1002/pro.5560050711

A. Godzik and J. Skolnick, Flexible algorithm for direct multiple alignment of protein structures and seequences, CABIOS, vol.10, pp.587-596, 1994.

D. Goldman, S. Istrail, and C. Papadimitriou, Algorithmic aspects of protein structure similarity, 40th Annual Symposium on Foundations of Computer Science (Cat. No.99CB37039), pp.512-521, 1999.
DOI : 10.1109/SFFCS.1999.814624

B. J. Jain and M. Lappe, Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem, LNCS, vol.4414, pp.410-423, 2007.
DOI : 10.1007/978-3-540-71233-6_32

P. Di-lena, P. Fariselli, L. Margara, M. Vassura, and R. Casadio, Fast overlapping of protein contact maps by alignment of eigenvectors, Bioinformatics, vol.26, issue.18, pp.2250-2258, 2010.
DOI : 10.1093/bioinformatics/btq402

N. Malod-dognin, Protein Structure Comparison: From Contact Map Overlap Maximisation to Distance-based Alignment Search Tool, 2010.
URL : https://hal.archives-ouvertes.fr/tel-00509142

L. Mavridis, V. Venkatraman, D. W. Ritchie, N. Morikawa, R. Andonov et al., Shrec-10 track: Protein models, 3DOR: Eurographics Workshop on 3D Object Retrieval, pp.117-124, 2010.
URL : https://hal.archives-ouvertes.fr/inria-00536680

D. Pelta, J. Gonzales, and M. Vega, A simple and fast heuristic for protein structure comparison, BMC Bioinformatics, vol.9, issue.1, p.161, 2008.
DOI : 10.1186/1471-2105-9-161

D. M. Strickland, E. Barnes, and J. S. Sokol, Optimal Protein Structure Alignment Using Maximum Cliques, Operations Research, vol.53, issue.3, pp.389-402, 2005.
DOI : 10.1287/opre.1040.0189

W. Xie and N. Sahinidis, A Reduction-Based Exact Algorithm for the Contact Map Overlap Problem, Journal of Computational Biology, vol.14, issue.5, pp.637-654, 2007.
DOI : 10.1089/cmb.2007.R007