Skip to Main content Skip to Navigation
Journal articles

SigReannot-mart: a query environment for expression microarray probe re-annotations.

Abstract : Expression microarrays are commonly used to study transcriptomes. Most of the arrays are now based on oligo-nucleotide probes. Probe design being a tedious task, it often takes place once at the beginning of the project. The oligo set is then used for several years. During this time period, the knowledge gathered by the community on the genome and the transcriptome increases and gets more precise. Therefore re-annotating the set is essential to supply the biologists with up-to-date annotations. SigReannot-mart is a query environment populated with regularly updated annotations for different oligo sets. It stores the results of the SigReannot pipeline that has mainly been used on farm and aquaculture species. It permits easy extraction in different formats using filters. It is used to compare probe sets on different criteria, to choose the set for a given experiment to mix probe sets in order to create a new one.
Complete list of metadatas

Cited literature [7 references]  Display  Hide  Download

https://hal.inria.fr/inria-00638684
Contributor : Francois Moreews <>
Submitted on : Thursday, May 28, 2020 - 8:47:49 PM
Last modification on : Friday, May 29, 2020 - 3:14:56 AM

File

2011_Moreews_Database_1.pdf
Publisher files allowed on an open archive

Identifiers

Citation

François Moreews, Gaelle Rauffet, Patrice Dehais, Christophe Klopp. SigReannot-mart: a query environment for expression microarray probe re-annotations.. Database - The journal of Biological Databases and Curation, Oxford University Press, 2011, 2011, pp.bar025. ⟨10.1093/database/bar025⟩. ⟨inria-00638684⟩

Share

Metrics

Record views

328

Files downloads

56