1. Recherche
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hal-00400799v2  Article dans une revue
Boris Adamczewski, Christiane Frougny, Anne Siegel, Wolfgang Steiner. Rational numbers with purely periodic $\beta$-expansion
Bulletin of the London Mathematical Society / The Bulletin of the London Mathematical Society, 2010, 42 (3), pp.538-552. <10.1112/blms/bdq019>
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inria-00353690v1  Rapport
Jacques Nicolas, Christine Rousseau, Anne Siegel, Pierre Peterlongo, François Coste et al.  Modeling local repeats on genomic sequences
[Research Report] RR-6802, INRIA. 2008, pp.43
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inria-00145537v2  Rapport
Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel. Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study
[Research Report] RR-6190, INRIA. 2007, pp.14
hal-00416396v1  Communication dans un congrès
Sophie Lemosquet, Jérémie Bourdon, Jocelyne Guinard-Flament, Anne Siegel, Jaap Van Milgen. A Generic Stochiometric Model to Analyse the Metabolic Flexibility of the Mammary Gland in Lactating Dairy Cows
INRA. 7th Workshop Modelling Nutrient Digestion and Utilization in Farm Animals, Sep 2009, Paris, France. pp.52, 2009
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inria-00071966v1  Rapport
Valerie Berthe, Anne Siegel. Purely Periodic beta-Expansions in the Pisot Non-unit Case
[Research Report] RR-4619, INRIA. 2002
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hal-00002208v1  Pré-publication, Document de travail
Valerie Berthe, Anne Siegel. Purely periodic beta-expansions in the Pisot non-unit case
2004
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hal-01058610v1  Article dans une revue
Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Martin Gebser et al.  Learning Boolean logic models of signaling networks with ASP
Journal of Theoretical Computer Science (TCS), Elsevier, 2015, pp.79-101. <10.1016/j.tcs.2014.06.022>
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hal-01390047v1  Article dans une revue
Vincent Picard, Odile Mulner-Lorillon, Jérémie Bourdon, Julia Morales, Patrick Cormier et al.  Model of the delayed translation of cyclin B maternal mRNA after sea urchin fertilization
Molecular Reproduction and Development, Wiley, 2016, <10.1002/mrd.22746>
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hal-01377844v1  Communication dans un congrès
Marie Chevallier, Meziane Aite, Jeanne Got, Guillaume Collet, Nicolas Loira et al.  Handling the heterogeneity of genomic and metabolic networks data within flexible workflows with the PADMet toolbox
Jobim 2016 : 17ème Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2016, Lyon, France. 2016
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inria-00331385v1  Communication dans un congrès
Carito Guziolowski, Jérémy Gruel, Ovidiu Radulescu, Anne Siegel. CURATING A LARGE-SCALE REGULATORY NETWORK BY EVALUATING ITS CONSISTENCY WITH EXPRESSION DATASETS
CIBB 2008: COMPUTATIONAL INTELLIGENCE METHODS FOR BIOINFORMATICS AND BIOSTATISTICS, Oct 2008, Salerno, Italy. 5488, pp.144-155, 2009, Lecture Notes in Computer Sciences LNCS. <http://www.springerlink.com/content/r058r17l84778kg9/?p=74d54a52824142029829f687fb65a4d3&pi=12>
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inserm-00984711v1  Article dans une revue
Tatiana Baumuratova, Didier Surdez, Bernard Delyon, Gautier Stoll, Olivier Delattre et al.  Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network.
BMC Systems Biology, BioMed Central, 2010, 4 (1), pp.146. <10.1186/1752-0509-4-146>
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hal-00980499v1  Article dans une revue
Pierre Blavy, Florence Gondret, Sandrine Lagarrigue, Jaap Van Milgen, Anne Siegel. Using a large-scale knowledge database on reactions and regulations to propose key upstream regulators of various sets of molecules participating in cell metabolism
BMC Systems Biology, BioMed Central, 2014, 8 (1), pp.32. <10.1186/1752-0509-8-32>
hal-01210940v1  Communication dans un congrès
Florence Gondret, Isabelle Louveau, Magalie Houee, David Causeur, Anne Siegel. Data integration
Meeting INRA-ISU, Mar 2015, Ames, United States. 11 diapositives, 2015
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hal-00947219v1  Article dans une revue
Oumarou Abdou-Arbi, Sophie Lemosquet, Jaap Van Milgen, Anne Siegel, Jérémie Bourdon. Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs
BMC Systems Biology, BioMed Central, 2014, 8 (1), pp.8. <10.1186/1752-0509-8-8>
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hal-01164751v1  Communication dans un congrès
Max Ostrowski, Loïc Paulevé, Torsten Schaub, Anne Siegel, Carito Guziolowski. Boolean Network Identification from Multiplex Time Series Data
Olivier Roux; Jérémie Bourdon. CMSB 2015 - 13th conference on Computational Methods for Systems Biology, Sep 2015, Nantes, France. Springer International Publishing, 9308, pp.170-181, Lecture Notes in Computer Science. <http://cmsb2015.sciencesconf.org/>. <10.1007/978-3-319-23401-4_15>
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hal-00729742v1  Communication dans un congrès
Pierre Blavy, Florence Gondret, Hervé Guillou, Sandrine Lagarrigue, Pascal Martin et al.  A minimal and dynamic model for fatty acid metabolism in mouse liver
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2008, Lille (FR), France
hal-00640720v1  Communication dans un congrès
Pierre Blavy, Florence Gondret, Thiele Sven, Carito Guziolowski, Sandrine Lagarrigue et al.  A new method for modeling reactions and regulations to analyze high-throughout data
4th International Symposium on Animal Functional Genomics, Oct 2011, Dublin, Ireland. 2011
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hal-00661751v1  Article dans une revue
Thierry Tonon, Damien Eveillard, Sylvain Prigent, Jérémie Bourdon, Philippe Potin et al.  Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment.
OMICS, Mary Ann Liebert, 2011, 15 (12), pp.883-892. <10.1089/omi.2011.0089>
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hal-00740722v1  Communication dans un congrès
Andres Aravena, Carito Guziolowski, Anne Siegel, Alejandro Maass. Using Mutual Information and Answer Set Programming to refine PWM based transcription regulation network
Jobim 2012, Jul 2012, Rennes, France. pp.171, 2012
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hal-00737112v2  Communication dans un congrès
Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Niels Grabe et al.  Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming
D. Gilbert and M. Heiner. CMSB - 10th Computational Methods in Systems Biology 2012, Oct 2012, London, United Kingdom. Springer, 7605, pp.342-361, 2012, CMSB 2012, LNCS. <10.1007/978-3-642-33636-2_20>
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lirmm-00105299v1  Article dans une revue
Valerie Berthe, Anne Siegel. Tilings Associated with Beta-numeration and Substitutions
Integers : Electronic Journal of Combinatorial Number Theory, State University of West Georgia, Charles University, and DIMATIA, 2005, Proceedings of the 2004 Number Theoretic Algorithms and Related Topics Workshop, 5 (3), pp.A2
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hal-01557347v1  Communication dans un congrès
Clémence Frioux, Torsten Schaub, Sebastian Schellhorn, Anne Siegel, Philipp Wanko. Hybrid Metabolic Network Completion
Marcello Balduccini; Tomi Janhunen. 14th International Conference on Logic Programming and Nonmonotonic Reasoning - LPNMR 2017, Jul 2017, Espoo, Finland. Springer, Lecture Notes in Artificial Intelligence, 10377, pp.308-321, 2017, Logic Programming and Nonmonotonic Reasoning
hal-01210385v1  Communication dans un congrès
Pierre Blavy, Florence Gondret, Sandrine Lagarrigue, Jacob Van Milgen, Anne Siegel. Exploitation à large échelle de bases de données de connaissance sur les réactions et régulations pour trouver des régulateurs clés de groupe de gènes
Journées ouvertes en biologie, informatique et mathématiques, Jul 2012, Rennes, France. INRIA, pp.161-170, 2012
hal-01210552v1  Poster
Sophie Lemosquet-Simon, O. Abdou Arbi, Jacob Van Milgen, Anne Siegel, Jérémie Bourdon. Exploring the metabolic flexibility of the mammary gland of dairy cows through flux-balance analysis
Meeting of the Animal Science Modelling Group, Jul 2013, Indianapolis, United States. 93 (4), 2013, Canadian Journal of Animal Science

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