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inria-00099792v1  Communication dans un congrès
Damien EveillardDelphine RopersHidde De JongChristiane BranlantAlexander BockmayrMultiscale modeling of alternative splicing regulation
Corrado Priami. International Workshop on Computational Methods in Systems Biology - CMSB'03, 2003, Rovereto, Italie, Springer-Verlag, 2602, pp.75-87, 2003, Lecture Notes in Computer Science
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inria-00000915v1  Communication dans un congrès
Damien EveillardAbdelhalim LarhlimiDelphine RopersStéphanie BillautSandrine PeyrefitteKOALAB: A new method for regulatory motif search. Illustration on alternative splicing regulation in HIV-1
5èmes Journées Ouvertes Biologie Informatique Mathématiques - JOBIM 2004, Jun 2004, Montréal, Canada, 2004
hal-00762122v1  Chapitre d'ouvrage
Grégory BattBruno BessonPierre-Emmanuel CironHidde De JongEstelle Dumas et al.  Genetic Network Analyzer: A Tool for the Qualitative Modeling and Simulation of Bacterial Regulatory Networks
Jacques van Helden, Ariane Toussaint, Denis Thieffry. Bacterial Molecular Networks Methods and Protocols, 804, Springer, pp.439-462, 2012, Methods in Molecular Biology,, 978-1-61779-361-5. <10.1007/978-1-61779-361-5_22>
hal-00793019v1  Chapitre d'ouvrage
Delphine RopersHidde JongHans GeiselmannMathematical modeling of genetic regulatory networks: Stress responses in ıt Escherichia coli
P. Fu and M. Letterich and S. Panke. Systems Biology and Synthetic Biology, John Wiley & Sons, pp.235-271, 2009
hal-00793037v1  Communication dans un congrès
Valentina BaldazziDelphine RopersHans GeiselmannDaniel KahnHidde JongImportance of metabolic coupling for the dynamics of gene expression following a diauxic shift in E. coli
Proceedings of the 18th IFAC World Congress, 2011, Milan, Italy. pp.14851-14856, 2011
hal-00793038v1  Chapitre d'ouvrage
Valentina BaldazziPedro T. MonteiroMichel PageDelphine RopersHans Geiselmann et al.  Qualitative analysis of genetic regulatory networks in bacteria
W. Dubitzky and J. Southgate and H. Fuss. Understanding the Dynamics of Biological Systems: Lessons Learned from Integrative Systems Biology, Springer, pp.111-130, 2011, 978-1-4419-7964-3. <10.1007/978-1-4419-7964-3_6>
hal-00793029v1  Communication dans un congrès
Pedro T. MonteiroPaulo J. DiasDelphine RopersArlindo L. OliveiraIsabel Sà-Correia et al.  Computational modeling and analysis of the yeast FLR1 regulatory network in mancozeb-challenged cells
11th International Conference on Systems Biology, ICSB 2010, 2010, Edinburgh, United Kingdom. pp.105, 2010
inria-00000916v1  Article dans une revue
Damien EveillardDelphine RopersHidde De JongChristiane BranlantAlexander BockmayrA multi-scale constraint programming model of alternative splicing regulation
Theoretical Computer Science, Elsevier, 2004, Special issue: computational systems biology, 325 (1), pp.3-24. <10.1016/j.tcs.2004.03.062>
hal-00966559v1  Communication dans un congrès
Ismail BelgacemEdith GracDelphine RopersJean-Luc GouzéA coupled transcription-translation mathematical model of RNA polymerase
21st International Symposium on Mathematical Theory of Networks and Systems, Jul 2014, Groningen, Netherlands. 2014
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hal-01239356v1  Communication dans un congrès
Stefano CasagrandaDelphine RopersJean-Luc GouzéModel reduction and process analysis of biological models
2015 23th Mediterranean Conference on Control and Automation (MED), Jun 2015, Torremolinos, Spain. 2015, Proceedings of 23th Mediterranean Conference on Control and Automation (MED). <10.1109/MED.2015.7158908>
hal-01091674v1  Communication dans un congrès
Ismail BelgacemEdith GracDelphine RopersJean-Luc GouzéStability analysis of a reduced transcription-translation model of RNA polymerase
Proceedings of the 53rd IEEE Conference on Decision and Control, Dec 2014, Los Angeles, CA, United States. 2014
hal-01412049v1  Communication dans un congrès
Stefano CasagrandaDelphine RopersJean-Luc GouzéModel simplification and process analysis of biological models
The 5th International Symposium on Positive Systems (POSTA), Sep 2016, Rome, Italy
inria-00357802v1  Communication dans un congrès
Pedro T. MonteiroDelphine RopersRadu MateescuAna T. FreitasHidde De JongTemporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks
M. Ghallab and C.D. Spyropoulos and N. Fakotakis and N. Avouris. 18th European Conference on Artificial Intelligence, Aug 2008, Patras, Greece. IOS Press, 2008
hal-01178203v1  Article dans une revue
Hidde De JongDelphine RopersRadu MateescuJohannes GeiselmannDe la cellule à la puce
Les Cahiers de l'INRIA - La Recherche, INRIA, 2008, 419, pp.I-II
hal-00793014v1  Communication dans un congrès
Delphine RopersValentina BaldazziHidde JongReduction of a kinetic model of the carbon starvation response in Escherichia coli
Proceedings of the 15th IFAC Symposium on System Identification, SYSID 2009, 2009, Saint Malo, France. IEEE, 2009
hal-00793021v1  Communication dans un congrès
Valentina BaldazziDelphine RopersYves MarkowiczDaniel KahnHans Geiselmann et al.  The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes
Actes des Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2010), 2010, Montpellier, France. pp.11-12, 2010
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