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hal-00796976v1
Article dans une revue
Kerrie L Mengersen, Pierre Pudlo, Christian Robert. Bayesian computation via empirical likelihood. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2013, 110 (4), pp.1321-1326. <10.1073/pnas.1208827110> |
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lirmm-01397005v1
Article dans une revue
Elodie Cassan, Anne-Muriel Arigon Chifolleau, Jean-Michel Mesnard, Antoine Gross, Olivier Gascuel. Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2016, 113 (41), pp.11537-11542. <10.1073/pnas.1605739113> |
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lirmm-01099869v1
Poster
Soumia Melzi, Clement Jonquet. Representing NCBO Annotator results in standard RDF with the Annotation Ontology A. Paschke; A. Burger; P. Romano; M.S. Marshall; A. Splendiani. SWAT4LS'14: 7th International Semantic Web Applications and Tools for Life Sciences, Dec 2014, Berlin, Germany. CEUR-WS.org, 1320, <http://ceur-ws.org/Vol-1320/> |
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lirmm-01070596v1
Rapport
Bastien Cazaux, Eric Rivals. 3-Shortest Superstring is 2-approximable by a greedy algorithm [Research Report] RR-14009, LIRMM. 2014 |
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lirmm-01185688v1
Communication dans un congrès
Eric Rivals. Correction of long sequencing reads: a novel approach Symposium "From Nucleotides to Networks", May 2015, Gand (Ghent), Belgium. 2015, <http://www.bign2n.ugent.be> |
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lirmm-01386569v1
Chapitre d'ouvrage
Fabio Pardi, Olivier Gascuel. Distance-based methods in phylogenetics Kliman R. Encyclopedia of Evolutionary Biology, pp.458-465, 2016, 1st Edition, 9780128000496. <http://store.elsevier.com/Encyclopedia-of-Evolutionary-Biology/isbn-9780128000496/> |
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lirmm-01237155v1
Communication dans un congrès
Fabio Pardi, Manuel Binet. Distance-based methods in phylogenomics FILOFOCS: French-Israeli Workshop on Foundations of Computer Science, May 2015, Tel Aviv, Israel. 2015, 4th French-Israeli Workshop on Foundations of Computer Science Tel-Aviv University - May 25-27, 2015. <http://hyde.eng.tau.ac.il/FILOFOCS-2015/> |
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lirmm-01237157v1
Communication dans un congrès
Fabio Pardi. Phylogenetic networks: what can we reconstruct? FILOFOCS: French-Israeli Workshop on Foundations of Computer Science, May 2014, Paris, France. 2014, <http://www.liafa.univ-paris-diderot.fr/~adiro/filofocs/filofocs2014/index.html> |
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lirmm-01237158v1
Communication dans un congrès
Fabio Pardi. Reconstructing evolutionary trees from distances FILOFOCS: French-Israeli Workshop on Foundations of Computer Science, May 2012, Paris, France. 2012, <http://www.liafa.univ-paris-diderot.fr/~adiro/filofocs/filofocs2012/filofocs.html> |
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lirmm-01088733v1
Poster
Maximilien Servajean, Esther Pacitti, Miguel Liroz-Gistau, Alexis Joly, Julien Champ. Plateforme de Recommandation Distribuée et Diversifiée pour les Sciences Citoyennes BDA: Bases de Données Avancées, Oct 2014, Grenoble-Autrans, France. 2014, Gestion de Données – Principes, Technologies et Applications. <http://bda2014.imag.fr> |
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lirmm-01073613v1
Communication dans un congrès
Ji Liu, Esther Pacitti, Patrick Valduriez, Vitor Silva Souza, Marta Mattoso. Scientific Workflow Partitioning in Multi-site Clouds L. Lopes. BigDataCloud'2014: 3rd Workshop on Big Data Management in Clouds in conjunction with Euro-Par 2014, Aug 2014, Porto, Portugal. Springer, Lecture Notes in Computer Science, 8805, pp.105-116, 2014, LNCS. <http://www.springer.com/computer/communication+networks/book/978-3-319-14324-8> |
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lirmm-01172232v1
Communication dans un congrès
Clement Jonquet, Esther Dzalé-Yeumo, Elizabeth Arnaud, Pierre Larmande. AgroPortal : a proposition for ontology-based services in the agronomic domain IN-OVIVE: INtégration de sources/masses de données hétérogènes et Ontologies, dans le domaine des sciences du VIVant et de l’Environnement, Jun 2015, Rennes, France. 3ème atelier INtégration de sources/masses de données hétérogènes et Ontologies, dans le domaine des sciences du VIVant et de l’Environnement, 2015 |
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lirmm-01223078v1
Communication dans un congrès
Guillaume Surroca, Philippe Lemoisson, Clement Jonquet, Stefano A. Cerri. Preference Dissemination by Sharing Viewpoints : Simulating Serendipity KEOD: Knowledge Engineering and Ontology Development, Nov 2015, Lisbon, Portugal. IC3K 2015, 7th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, 7th Intertnational Conference on Knowledge Engineering and Ontology Development (2), pp.402-409, 2015, Volume 2 : KEOD |
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lirmm-00879527v1
Communication dans un congrès
Miguel Liroz-Gistau, Reza Akbarinia, Divyakant Agrawal, Esther Pacitti, Patrick Valduriez. Data Partitioning for Minimizing Transferred Data in MapReduce Hameurlain, Abdelkader and Rahayu, Wenny and Taniar, David. Globe'2013: 6th International Conference on Data Management in Cloud, Grid and P2P Systems, Aug 2013, Prague, Czech Republic. Springer, pp.1-12, 2013, LNCS. <http://www.irit.fr/globe13/>. <10.1007/978-3-642-40053-7_1> |
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lirmm-00879531v1
Communication dans un congrès
Miguel Liroz-Gistau, Reza Akbarinia, Divyakant Agrawal, Esther Pacitti, Patrick Valduriez. MR-Part : Minimizing Data Transfers Between Mappers and Reducers in MapReduce BDA: Bases de Données Avancées, Oct 2013, Nantes, France. 29e journées Bases de Donnees Avancées, 2013, <http://bda2013.univ-nantes.fr/> |
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lirmm-01162359v1
Communication dans un congrès
Reza Akbarinia, Miguel Liroz-Gistau, Divyakant Agrawal, Patrick Valduriez. An Efficient Solution for Processing Skewed MapReduce Jobs Globe'2015: 8th International Conference on Data Management in Cloud, Grid and P2P Systems, Sep 2015, Valencia, Spain |
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lirmm-01397427v1
Communication dans un congrès
Olivier Gascuel. Fast Dating using Least Squares Mathematical Models for Epidemiology and Phylogenetics, May 2016, Lille, France. 2016, <http://math.univ-lille1.fr/~tran/journees_epidemio2016.html> |
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lirmm-01397465v1
Poster
Clement Jonquet, Esther Dzalé-Yeumo, Elizabeth Arnaud, Pierre Larmande, Anne Toulet et al. AgroPortal : A Proposition for Ontology-Based Services in the Agronomic Domain PAG: Plant & Animal Genome, Jan 2016, San Diego, United States. International Plant & Animal Genome XXIV, 2016, Systems Biology and Ontologies, Poster session. <https://pag.confex.com/pag/xxiv/webprogram/POSTER.html> |
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lirmm-00938959v1
Communication dans un congrès
Eric Rivals. Building the Assembly De Bruijn Graph from an Implicit Suffix Tree Jens Stoye and Roland Wittler. Mini-Workshop on the Storage, Search and Annotation of Multiple Similar Genomes, Dec 2013, Bielefeld, Germany. 2013, <http://wiki.techfak.uni-bielefeld.de/didy/workshopPangenomeStorageSearch> |
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lirmm-01240278v1
Rapport
Bastien Cazaux, Eric Rivals. A linear time algorithm for Shortest Cyclic Cover of Strings [Research Report] IBC; LIRMM. 2015 |
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lirmm-01409092v1
Communication dans un congrès
Ji Liu, Esther Pacitti, Patrick Valduriez, Daniel De Oliveira, Marta Mattoso. Scientific Workflow Execution with Multiple Objectives in Multisite Clouds BDA: Bases de Données Avancées, Nov 2016, Poitiers, France. 32ème Conférence sur la Gestion de Données - Principes, Technologies et Applications, 2016, Principes, Technologies et Applications. <https://bda2016.ensma.fr> |
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lirmm-00950983v2
Rapport
Bastien Cazaux, Thierry Lecroq, Eric Rivals. From Indexing Data Structures to de Bruijn Graphs [Research Report] RR-14004, LIRMM. 2014 |
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lirmm-00806103v1
Communication dans un congrès
Niko Välimäki, Eric Rivals. Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data Z. Cai et al. ISBRA'2013: International Symposium on Bioinformatics Research and Applications, May 2013, Charlotte, NC, United States. Spinger-Verlag, 7875 (7875), pp.237-248, 2013, Lecture Notes in Bioinformatics (LNBI). <http://www.cvent.com/events/isbra-2013> |
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hal-01018103v1
Article dans une revue
Jorge Augusto Meira, Eduardo Cunha de Almeida, Gerson Sunyé, Yves Le Traon, Patrick Valduriez. Stress Testing of Transactional Database Systems Journal of Information and Data Management, Brazilian Computer Society, 2013, 4 (3), <http://hdl.handle.net/10993/9919> |
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hal-01066076v1
Communication dans un congrès
Johannes Starlinger, Sarah Cohen-Boulakia, Sanjeev Khanna, Susan Davidson, Ulf Leser. Layer Decomposition: An Effective Structure-based Approach for Scientific Workflow Similarity IEEE e-Science conference, Oct 2014, Guarujá, Brazil. 2014 |
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lirmm-00806676v1
Communication dans un congrès
Maximilien Servajean, Esther Pacitti, Sihem Amer-Yahia, Pascal Neveu. Profile Diversity in Search and Recommendation Ido Guy; Michelle X. Zhou; Li Chen. SRS: Social Recommender Systems (in conjunction WWW 2013), May 2013, Rio de Janeiro, Brazil. IW3C2, International World Wide Web Conference Committee (IW3C2) - SRS 2013: 4th International Workshop on Social Recommender Systems (in conjunction WWW 2013 Companion, ACM 978-1-4503-2038-2/13/05., pp.973-980, 2013, <www2013.org/program/4th-international-conference-on-social-recommender-systems/> |
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hal-01411565v1
Communication dans un congrès
Luyen Le Ngoc, Anne Tireau, Aravind Venkatesan, Pascal Neveu, Pierre Larmande. Development of a knowledge system for Big Data: Case study to plant phenotyping data WIMS '16 Proceedings of the 6th International Conference on Web Intelligence, Mining and Semantics, Jun 2016, Nimes, France. ACM, <http://dl.acm.org/citation.cfm?id=2912869>. <10.1145/2912845.2912869> |
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lirmm-00879575v1
Communication dans un congrès
Maximilien Servajean, Esther Pacitti, Sihem Amer-Yahia, Pascal Neveu. Profile Diversity for Phenotyping Data Search and Recommendation BDA: Bases de Données Avancées, Oct 2013, Nantes, France. 29e Journées Bases de Données Avancées, 2013, <http://bda2013.univ-nantes.fr> |
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hal-01160897v1
Article dans une revue
Sarah Cohen-Boulakia, Patrick Valduriez. Interrogation et gestion de données bio-informatiques pour la biologie moléculaire Techniques de l'Ingenieur, Techniques de l'ingénieur, 2015, pp.BIO7055 |
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lirmm-01052546v1
Poster
Emmanuel Castanier, Clement Jonquet, Soumia Melzi, Pierre Larmande, Manuel Ruiz et al. Semantic Annotation Workflow using Bio-Ontologies Workshop on Crop Ontology and Phenotyping Data Interoperability, Mar 2014, Montpellier, France. 2014, <https://sites.google.com/a/cgxchange.org/cropontologycommunity/> |
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