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hal-00825867v1  Autre publication
Barbara André, Tom Vercauteren, Anna M. Buchner, Muhammad Waseem Shahid, Michael B. Wallace et al.  Toward a structured training system for probe-based Confocal Laser Endomicroscopy (pCLE) on Barrett's Esophagus: a video retrieval approach to estimate diagnosis difficulty
Gastrointestinal Endoscopy. 2011
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inria-00287048v1  Communication dans un congrès
B.T. Thomas Yeo, Mert Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl et al.  Spherical Demons: Fast Surface Registration
Medical Image Computing and Computer Assisted Intervention, Sep 2008, New York, United States. Springer-Verlag, 2008
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hal-01010701v1  Communication dans un congrès
Marzieh Kohandani Tafreshi, Bertrand Napoléon, Anne-Isabelle Lemaistre, Marc Giovannini, Virendra Joshi et al.  Smart Atlas for Supporting the Interpretation of needle-based Confocal Laser Endomicroscopy (nCLE) of Pancreatic Cysts: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition
Digestive Disease Week (DDW 2014), May 2014, Chicago, United States. 2014
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hal-01010673v1  Communication dans un congrès
Marzieh Kohandani Tafreshi, Nicolas Linard, Barbara André, Nicholas Ayache, Tom Vercauteren. Semi-automated Query Construction for Content-based Endomicroscopy Video Retrieval
Medical Image Computing and Computer Assisted Intervention (MICCAI), Sep 2014, Boston, United States. 2014
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hal-01010762v1  Communication dans un congrès
Marzieh Kohandani Tafreshi, Yan-Qing Li, Rapat Pittayanon, Douglas Pleskow, Virendra Joshi et al.  Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Gastric Lesions: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition
Digestive Disease Week (DDW 2014), May 2014, Chicago, United States. 2014
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hal-01010765v1  Communication dans un congrès
Marzieh Kohandani Tafreshi, Virendra Joshi, Alexander Meining, Charles Lightdale, Marc Giovannini et al.  Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Biliary Strictures: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition
Digestive Disease Week (DDW 2014), May 2014, Chicago, United States. 2014
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inria-00280602v1  Communication dans un congrès
Tom Vercauteren, Xavier Pennec, Aymeric Perchant, Nicholas Ayache. Symmetric Log-Domain Diffeomorphic Registration: A Demons-based Approach
Dimitris Metaxas and Leon Axel and Gabor Fichtinger and Gábor Székely. Medical Image Computing and Computer Assisted Intervention, Sep 2008, New York, United States. Springer, 5241, pp.754--761, 2008, Lecture Notes in Computer Science - LNCS; Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), part I. <10.1007/978-3-540-85988-8_90>
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inria-00166123v1  Communication dans un congrès
Tom Vercauteren, Xavier Pennec, Aymeric Perchant, Nicholas Ayache. Non-parametric Diffeomorphic Image Registration with the Demons Algorithm
Nicholas Ayache and Sébastien Ourselin and Anthony Maeder. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), Oct 2007, Brisbane, Australia. 4792/2007, pp.319-326, 2007, Lecture Notes in Computer Science. <10.1007/978-3-540-75759-7_39>
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inria-00166791v1  Communication dans un congrès
Tom Vercauteren, Aymeric Perchant, Xavier Pennec, Nicholas Ayache. Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences
Jim Duncan and Guido Gerig. Medical Image Computing and Computer-Assisted Intervention, Oct 2005, Palm Springs, United States. pp.753-760, Lecture Notes in Computer Science; Proceedings of the 8th International Conference on Medical Image Computing and Computer-Assisted Intervention. <10.1007/11566465_93>
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hal-00813813v1  Article dans une revue
Barbara André, Tom Vercauteren, Anna M. Buchner, Murli Krishna, Nicholas Ayache et al.  Software for Automated Classification of probe-based Confocal Laser Endomicroscopy Videos of Colorectal Polyps
World Journal of Gastroenterology, Baishideng Publishing Group Co. Limited, 2012, pp.5560-5569
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inserm-00855958v1  Article dans une revue
Irina Vidal-Migallón, Olivier Commowick, Xavier Pennec, Julien Dauguet, Tom Vercauteren. GPU & CPU implementation of Young - Van Vliet's Recursive Gaussian Smoothing Filter
Insight Journal (ITK), 2013, pp.16
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hal-00813744v1  Autre publication
Florence Dru, Tom Vercauteren. An ITK Implementation of the Symmetric Log-Domain Diffeomorphic Demons Algorithm
To be filled IN. 2009
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inria-00165534v1  Communication dans un congrès
Tom Vercauteren, Xavier Pennec, Ezio Malis, Aymeric Perchant, Nicholas Ayache. Insight Into Efficient Image Registration Techniques and the Demons Algorithm
Nico Karssemeijer and Boudewijn Lelieveldt. Information Processing in Medical Imaging, Jul 2007, Kerkrade, Netherlands. 4584/2007, pp.495-506, 2007, Lecture Notes in Computer Science; 20th International Conference, IPMI 2007, Kerkrade, The Netherlands, July 2-6, 2007. Proceedings. <10.1007/978-3-540-73273-0_41>
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hal-00813791v1  Communication dans un congrès
Barbara André, Tom Vercauteren, Nicholas Ayache. Content-Based Retrieval in Endomicroscopy: Toward an Efficient Smart Atlas for Clinical Diagnosis
Proceedings of the MICCAI Workshop - Medical Content-based Retrieval for Clinical Decision (MCBR-CDS'11), 2011, Toronto, Canada. Springer, pp.12-23, 2011, LNCS
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tel-00221481v2  Thèse
Tom Vercauteren. Image registration and mosaicing for dynamic In vivo fibered confocal microscopy
Human-Computer Interaction [cs.HC]. École Nationale Supérieure des Mines de Paris, 2008. English. <NNT : 2008ENMP1521>
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hal-00813816v1  Autre publication
Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, Nicholas Ayache. Image-based Semantic Learning Software for Automatic Detection of Discriminative Criteria used for probe-based Confocal Laser Endomicroscopy (pCLE) Diagnosis of Colorectal Polyps
Gastrointestinal Endoscopy. 2012
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hal-00813812v1  Autre publication
Barbara André, Tom Vercauteren, Anna M. Buchner, Murli Krishna, Nicholas Ayache et al.  Comparison of a Classification Software based on Image Retrieval with the Off-Line Diagnosis of Expert Endoscopists for probe-based Confocal Laser Endomicroscopy (pCLE) of Colorectal Polyps
Gastrointestinal Endoscopy (DDW 2012). 2012
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inria-00166610v1  Communication dans un congrès
Aymeric Perchant, Tom Vercauteren, Fabien Oberrietter, Nicolas Savoire, Nicholas Ayache. Region Tracking Algorithms on Laser Scanning Devices Applied to Cell Traffic Analysis
Jeffrey A. Fessler. IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07), Apr 2007, Arlington, United States. Biomedical Imaging: From Nano to Macro, 2007. ISBI 2007. 4th International Symposium on. <10.1109/ISBI.2007.356838>
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inria-00272326v1  Communication dans un congrès
B.T. Thomas Yeo, Tom Vercauteren, Pierre Fillard, Xavier Pennec, Polina Golland et al.  DTI Registration with Exact Finite-Strain Differential
IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), May 2008, Paris, France. IEEE, pp.700-703, 2008, <10.1109/ISBI.2008.4541092>
inria-00615589v1  Communication dans un congrès
Nicholas Ayache, Tom Vercauteren, Grégoire Malandain, Fabien Oberrietter, Nicolas Savoire et al.  Processing and Mosaicing of Fibered Confocal Images
MICCAI Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'06), 2006, no address, Denmark. 2006
inria-00615981v1  Communication dans un congrès
Georges Le Goualher, Aymeric Perchant, Magalie Genet, Charlotte Cave, Bertrand Viellerobe et al.  Towards Optical Biopsies with an Integrated Fibered Confocal Fluorescence Microscope
Barillot, Christian and Haynor, David and Hellier, Pierre. Proc. of MICCAI'04, 2004, Saint-Malo, France, France. Springer, 3217, pp.761--768, 2004, LNCS
inria-00616083v1  Chapitre d'ouvrage
Tom Vercauteren, Nicholas Ayache, Nicolas Savoire, Grégoire Malandain, Aymeric Perchant. Processing of In Vivo Fibered Confocal Microscopy Video Sequences
Rittscher, Jens and Machiraju, Raghu and Wong, Stephen T.C. Microscopic Image Analysis for Life Science Applications, Artech House, pp.441--463, 2008
inria-00616115v1  Communication dans un congrès
Barbara André, Hervé Delingette. Versatile design of changing mesh topologies for surgery simulation
Fourth International Symposium on BioMedical Simulation (ISBMS'08), 2008, London, UK, United Kingdom. Springer, 5104, pp.147--156, 2008, Lecture Notes in Computer Science
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inria-00616140v1  Communication dans un congrès
Barbara André, Tom Vercauteren, Aymeric Perchant, Anna M. Buchner, Michael B. Wallace et al.  Endomicroscopic image retrieval and classification using invariant visual features
Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI'09), 2009, Boston, MA, United States. IEEE, pp.346--349, 2009, <10.1109/ISBI.2009.5193055>
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inria-00616164v1  Communication dans un congrès
Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, Nicholas Ayache. Endomicroscopic video retrieval using mosaicing and visual words
Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), 2010, no address, United States. IEEE, pp.1419--1422, 2010, <10.1109/ISBI.2010.5490265>
inria-00616095v1  Chapitre d'ouvrage
Tommaso Mansi, Barbara André, Michael Lynch, Maxime Sermesant, Hervé Delingette et al.  Virtual Pulmonary Valve Replacement Interventions with a Personalised Cardiac Electromechanical Model
Magnenat-Thalmann, Nadia and Zhang, Jian J. and Feng, David D. Recent Advances in the 3D Physiological Human, Springer, pp.201-210, 2009, 978-1-84882-564-2
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inria-00616139v1  Communication dans un congrès
Barbara André, Tom Vercauteren, Aymeric Perchant, Anna M. Buchner, Michael B. Wallace et al.  Introducing space and time in local feature-based endomicroscopic image retrieval
Proceedings of the MICCAI Workshop - Medical Content-based Retrieval for Clinical Decision (MCBR-CDS'09), 2009, London, United Kingdom. Springer, 5853, pp.18-30, 2010, Lecture Notes in Computer Science. <10.1007/978-3-642-11769-5_2>
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inria-00616153v1  Communication dans un congrès
Barbara André, Tom Vercauteren, Anna M. Buchner, Muhammad Waseem Shahid, Michael B. Wallace et al.  An image retrieval approach to setup difficulty levels in training systems for endomicroscopy diagnosis
Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), 2010, Beijing, China, United States. Springer, 6362, pp.480--487, 2010, Lecture Notes in Computer Science. <10.1007/978-3-642-15745-5_59>
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