Cued fear conditioning in zebrafish (Danio rerio, Zebrafish Protocols for Neurobehavioral Research, pp.257-264, 2012. ,
Über eine farbenprächtige Neuheit, Hemigrammus rhodostomus E. AHL, sp, Wschr. Aq. Terr. kde, vol.2, pp.405-406, 1924. ,
A Simulation Study on the Schooling Mechanism in Fish, Bulletin of the Japanese Society of Scientific Fisheries, vol.48, pp.1081-1088, 1982. ,
Synchronization and collective swimming patterns in fish (Hemigrammus bleheri), Journal of The Royal Society Interface, vol.13, issue.123, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01400661
Physical Chemistry for the Life Sciences, 2011. ,
Information transfer and behavioural inertia in starling flocks, Nature Physics, vol.10, issue.9, pp.691-696, 2014. ,
Emergence of collective changes in travel direction of starling flocks from individual birds fluctuations, Journal of The Royal Society Interface, vol.12, issue.108, 2015. ,
Collective behaviour without collective order in wild swarms of midges, PLoS Comput Biol, vol.10, issue.7, p.1003697, 2014. ,
Pretty patterns but a simple strategy: Predator-prey interactions between juvenile herring and Atlantic puffins observed with multibeam sonar, Canadian Journal of Zoology, vol.79, issue.9, pp.1586-1596, 2001. ,
Interaction ruling animal collective behavior depends on topological rather than metric distance: Evidence from a field study, Proceedings of the National Academy of Sciences, vol.105, issue.4, pp.1232-1237, 2008. ,
A real-time 3D video tracking system for monitoring primate groups, Journal of Neuroscience Methods, vol.234, pp.147-152, 2014. ,
Fitting linear mixed-effects models using lme4, Journal of Statistical Software, vol.67, issue.1, pp.1-48, 2015. ,
Collective decision making in cohesive flocks, New Journal of Physics, vol.12, issue.9, p.93019, 2010. ,
Social interactions dominate speed control in poising natural flocks near criticality, Proceedings of the National Academy of Sciences, vol.111, issue.20, pp.7212-7217, 2014. ,
Self-organization in social insects, Trends in Ecology Evolution, vol.12, issue.5, pp.188-193, 1997. ,
High-throughput ethomics in large groups of Drosophila, Nat Meth, vol.6, issue.6, pp.451-457, 2009. ,
Magnetization reversal times in the twodimensional Ising model, Physical Review E, vol.67, issue.2, p.26119, 2003. ,
Emergence of macroscopic directed motion in populations of motile colloids, Nature, vol.503, issue.7474, pp.95-98, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01422384
Ionic effects in self-propelled Pt-coated Janus swimmers, Soft Matter, vol.10, issue.22, pp.4016-4027, 2014. ,
Social learning in fishes: A review, Fish and Fisheries, vol.4, issue.3, pp.280-288, 2003. ,
Learning about danger: Chemical alarm cues and local risk assessment in prey fishes, Fish and Fisheries, vol.4, issue.3, pp.227-234, 2003. ,
History of the Lenz-Ising Model, Rev. Mod. Phys, vol.39, issue.4, pp.883-893, 1967. ,
From disorder to order in marching locusts, Science, vol.312, issue.5778, pp.1402-1406, 2006. ,
Distinct retinal pathways drive spatial orientation behaviors in zebrafish navigation, Current Biology, vol.20, issue.4, pp.381-386, 2010. ,
Active Brownian motion tunable by light, Journal of Physics: Condensed Matter, vol.24, issue.28, p.284129, 2012. ,
Disentangling and modeling interactions in fish with burst-and-coast swimming, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01743510
Swarming, schooling, milling: Phase diagram of a data-driven fish school model, New Journal of Physics, vol.16, issue.1, p.15026, 2014. ,
URL : https://hal.archives-ouvertes.fr/cea-01215970
Collective response to perturbations in a data-driven fish school model, Journal of The Royal Society Interface, vol.12, issue.104, 2015. ,
URL : https://hal.archives-ouvertes.fr/cea-01366736
SelfOrganization in Biological Systems, Princeton studies in complexity, 2001. ,
Hemigrammus tocantinsi: A new species from the upper rio Tocantins basin, Central Brazil (Characiformes: Characidae), Neotropical Ichthyology, vol.8, pp.247-254, 2010. ,
Statistical physics of social dynamics, Reviews of Modern Physics, vol.81, issue.2, pp.591-646, 2009. ,
A stochastic vision-based model inspired by zebrafish collective behaviour in heterogeneous environments, Royal Society Open Science, vol.3, issue.1, 2016. ,
Effective leadership and decision-making in animal groups on the move, Nature, vol.433, issue.7025, pp.513-516, 2005. ,
Collective memory and spatial sorting in animal groups, Journal of Theoretical Biology, vol.218, issue.1, pp.1-11, 2002. ,
Interactions between shoal size and conformity in guppy social foraging, Animal Behaviour, vol.62, issue.5, pp.917-925, 2001. ,
Computerized video analysis of social interactions in mice, Nat Meth, vol.9, issue.4, pp.410-417, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00718562
Shoals and schools: Back to the heuristic definitions and quantitative references, Reviews in Fish Biology and Fisheries, vol.22, issue.3, pp.595-619, 2012. ,
Automated image-based tracking and its application in ecology, Trends in Ecology Evolution, vol.29, issue.7, pp.417-428, 2014. ,
Army ants trapped by their evolutionary history, PLoS Biology, vol.1, issue.2, p.7, 2003. ,
URL : https://hal.archives-ouvertes.fr/halsde-00192972
Collective motion of vibrated polar disks, Phys. Rev. Lett, vol.105, issue.9, p.98001, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-01422397
Escape manoeuvres of schooling Clupea harengus, Journal of Fish Biology, vol.45, pp.97-110, 1994. ,
Principles of Animal Behavior: Third International Student Edition, 2013. ,
Memory: A Contribution to Experimental Psychology, Teachers College, 1913. ,
, Seamless R and C++ Integration with Rcpp, 2013.
Rcpp: Seamless R and C++ Integration, Journal of Statistical Software, vol.40, issue.8, pp.1-18, 2011. ,
Conformists and mavericks: The empirics of frequency-dependent cultural transmission, Evolution and Human Behavior, vol.29, issue.1, pp.56-64, 2008. ,
Predator vigilance and group size in mammals and birds: A critical review of the empirical evidence, Biological Reviews, vol.64, issue.1, pp.13-33, 1989. ,
Run-and-tumble dynamics of self-propelled particles in confinement, Europhysics Letters), vol.109, issue.5, p.58003, 2015. ,
Hydrodynamics of sperm cells near surfaces, Biophysical Journal, vol.99, issue.4, pp.1018-1026, 2010. ,
Catalog of fishes: Genera, species, references, 2017. ,
Three-dimensional trajectories and network analyses of group behaviour within chimney swift flocks during approaches to the roost, Proceedings of the Royal Society of London B: Biological Sciences, vol.284, 1849. ,
Social behaviour: Mexican waves in an excitable medium, Nature, vol.419, issue.6903, pp.131-132, 2002. ,
Human waves in stadiums, Physica A: Statistical Mechanics and its Applications, vol.330, issue.1-2, pp.18-24, 2003. ,
Fish lateral system is required for accurate control of shoaling behaviour, Animal Behaviour, vol.79, issue.3, pp.679-687, 2010. ,
Evidence for the dilution effect in the selfish herd from fish predation on a marine insect, Nature, vol.293, issue.5832, pp.466-467, 1981. ,
Steady-state analysis of strongly colored multiplicative noise in a dye laser, Phys. Rev. A, vol.35, issue.4, pp.1838-1842, 1987. ,
Visual attention and the acquisition of information in human crowds, Proceedings of the National Academy of Sciences, vol.109, pp.7245-7250, 2012. ,
Deciphering interactions in moving animal groups, PLoS Computational Biology, vol.8, issue.9, p.1002678, 2012. ,
Analyzing fish movement as a persistent turning walker, Journal of Mathematical Biology, vol.58, issue.3, pp.429-445, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00315336
Waves of agitation inside anchovy schools observed with multibeam sonar: A way to transmit information in response to predation, ICES Journal of Marine Science, vol.63, issue.8, pp.1405-1417, 2006. ,
The origin of traveling waves in an emperor penguin huddle, New Journal of Physics, vol.15, issue.12, p.125022, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00925832
Collective behavior in animal groups: Theoretical models and empirical studies, HFSP Journal, vol.2, issue.4, pp.205-219, 2008. ,
Intermittent collective dynamics emerge from conflicting imperatives in sheep herds, Proceedings of the National Academy of Sciences, vol.112, issue.41, pp.12729-12734, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01293038
Nonequilibrium Equation of State in Suspensions of Active Colloids, Phys. Rev. X, vol.5, issue.1, p.11004, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01132427
Time-dependent statistics of the Ising model, Journal of Mathematical Physics, vol.4, issue.2, pp.294-307, 1963. ,
Effect of group size on avoidance learning in zebra fish,Brachydanio rerio (Pisces: Cyprinidae), Animal Learning & Behavior, vol.5, issue.2, pp.213-216, 1977. ,
Discrete modes of social information processing predict individual behavior of fish in a group, 2017. ,
Sensory compensation and the detection of predators: The interaction between chemical and visual information, Proceedings of the Royal Society B: Biological Sciences, vol.267, pp.571-575, 1443. ,
, The Diversity of Fishes: Biology, Evolution, and Ecology, 2009.
Self-organized shape and frontal density of fish schools, Ethology, vol.114, issue.3, pp.245-254, 2008. ,
Emergence of oblong school shape: Models and empirical data of fish, Ethology, vol.116, issue.11, pp.1099-1112, 2010. ,
What underlies waves of agitation in starling flocks, Behavioral Ecology and Sociobiology, vol.69, issue.5, pp.755-764, 2015. ,
The increased efficiency of fish swimming in a school, 2014. ,
Understanding how animal groups achieve coordinated movement, Journal of Experimental Biology, vol.219, issue.19, pp.2971-2983, 2016. ,
Initiation and spread of escape waves within animal groups, Royal Society Open Science, vol.2, issue.4, p.140355, 2015. ,
The role of individuality in collective group movement, Proceedings of the Royal Society of London B: Biological Sciences, vol.280, 1752. ,
Inferring the rules of interaction of shoaling fish, Proceedings of the National Academy of Sciences, vol.108, issue.46, pp.18726-18731, 2011. ,
How predation shapes the social interaction rules of shoaling fish, Proceedings of the Royal Society of London B: Biological Sciences, vol.284, 1861. ,
Social organisation, shoal structure and information transfer, Fish and Fisheries, vol.4, issue.3, pp.269-279, 2003. ,
Comparative study of the olfactory epithelium of the three-spined stickleback (Gasterosteus aculeatus) and the nine-spined stickleback (Pungitius pungitius)', Cell and Tissue, Research, vol.269, issue.2, pp.267-273, 1992. ,
A Shuttle Box for Fish and a Control Circuit of General Applicability, The American Journal of Psychology, vol.74, issue.1, pp.114-120, 1961. ,
Self-motile colloidal particles: From directed propulsion to random walk, Phys. Rev. Lett, vol.99, issue.4, p.48102, 2007. ,
Scale-free correlations in flocking systems with position-based interactions, Journal of Statistical Physics, vol.158, issue.3, pp.549-562, 2015. ,
Communication of velocity changes in jack mackerel (Trachurus symmetricus) schools, Animal Behaviour, vol.17, issue.0, pp.507-514, 1969. ,
The simulation of the movement of fish schools, Journal of Theoretical Biology, vol.156, issue.3, pp.365-385, 1992. ,
Order and flexibility in the motion of fish schools, Journal of Theoretical Biology, vol.214, issue.3, pp.371-387, 2002. ,
The confusion effect from neural networks to reduced predation risk, Behavioral Ecology, vol.19, issue.1, pp.126-130, 2007. ,
, Table 1 -Numbers of threatened species by major groups of organisms, IUCN, 1996.
Identifying influential neighbors in animal flocking, PLOS Computational Biology, vol.13, issue.11, pp.1-32, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01691014
A 2D virtual reality system for visual goal-driven navigation in zebrafish larvae, vol.6, p.34015, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01373398
Dynamical systems: A unified colored-noise approximation, Phys. Rev. A, vol.35, issue.10, pp.4464-4466, 1987. ,
Speeding up social waves. Propagation mechanisms of shimmering in giant honeybees, PLoS ONE, vol.9, issue.1, p.86315, 2014. ,
Social waves in giant honeybees repel hornets, PLoS ONE, vol.3, issue.9, p.3141, 2008. ,
Inferring the structure and dynamics of interactions in schooling fish, Proceedings of the National Academy of Sciences, vol.108, issue.46, pp.18720-18725, 2011. ,
Selfish-herd behaviour of sheep under threat, Current Biology, vol.22, issue.14, pp.561-562, 2012. ,
Coarse-grained analysis of stochasticity-induced switching between collective motion states, Proceedings of the National Academy of Sciences, vol.104, issue.14, pp.5931-5935, 2007. ,
Living in Groups, 2002. ,
Swarming and swirling in self-propelled polar granular rods, Phys. Rev. Lett, vol.100, issue.5, p.58001, 2008. ,
Artificial fish schools: Collective effects of school size, body size, and body form, Artificial Life, vol.9, issue.3, pp.237-253, 2003. ,
Signatures of optimal control in pairs of schooling zebrafish, Proceedings of the Royal Society of London B: Biological Sciences, vol.284, 1852. ,
The psychology of social impact, American psychologist, vol.36, issue.4, pp.343-356, 1981. ,
Collective motion in animal groups from a neurobiological perspective: The adaptive benefits of dynamic sensory loads and selective attention, Journal of Theoretical Biology, vol.261, issue.4, pp.501-510, 2009. ,
Motion-guided attention promotes adaptive communications during social navigation, Proceedings of the Royal Society of London B: Biological Sciences, vol.280, 1754. ,
Least-squares means: The R package lsmeans, Journal of Statistical Software, vol.69, issue.1, pp.1-33, 2016. ,
Effects of successive predator attacks on prey aggregations, Theoretical Ecology, vol.7, issue.3, pp.239-252, 2014. ,
Étude expérimentale et modélisation des déplacements collectifs chez deux espèces de poissons, Khulia mugil et Hemigrammus rhodostomus, 2015. ,
From behavioural analyses to models of collective motion in fish schools, Interface Focus, vol.2, issue.6, pp.693-707, 2012. ,
Fluctuation-dissipation: Response theory in statistical physics, Physics Reports, vol.461, issue.4-6, pp.111-195, 2008. ,
Weighted parsimony phylogeny of the family Characidae (Teleostei: Characiformes), Cladistics, vol.25, issue.6, pp.574-613, 2009. ,
Both information and social cohesion determine collective decisions in animal groups, Proceedings of the National Academy of Sciences, vol.110, issue.13, pp.5263-5268, 2013. ,
The biological bases of conformity, Frontiers in Neuroscience, vol.6, 2012. ,
How simple rules determine pedestrian behavior and crowd disasters, Proceedings of the National Academy of Sciences, vol.108, issue.17, pp.6884-6888, 2011. ,
Replication and analysis of Ebbinghaus' forgetting curve, PLOS ONE, vol.10, issue.7, pp.1-23, 2015. ,
A jump persistent turning walker to model zebrafish locomotion, Journal of The Royal Society Interface, vol.12, issue.102, pp.20140884-20140884, 2015. ,
Hierarchical group dynamics in pigeon flocks, Nature, vol.464, issue.7290, pp.890-893, 2010. ,
Long-lived giant number fluctuations in a swarming granular nematic, Science, vol.317, issue.5834, pp.105-108, 2007. ,
Herring schooling manoeuvres in response to killer whale attacks, Canadian Journal of Zoology, vol.77, issue.10, pp.1540-1546, 1999. ,
Sedimentation and effective temperature of active colloidal suspensions, Phys. Rev. Lett, vol.105, issue.8, p.88304, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-01628773
Living crystals of lightactivated colloidal surfers, Science, vol.339, issue.6122, pp.936-940, 2013. ,
Complexity, pattern, and evolutionary trade-offs in animal aggregation, Science, vol.284, issue.5411, pp.99-101, 1999. ,
Self-organized fish schools: An examination of emergent properties, The biological bulletin, vol.202, issue.3, pp.296-305, 2002. ,
The sensory basis of fish schools: Relative roles of lateral line and vision, Journal of Comparative Physiology, vol.135, issue.4, pp.315-325, 1980. ,
idTracker: Tracking individuals in a group by automatic identification of unmarked animals, Nature Methods, pp.743-748, 2014. ,
Scalable rules for coherent group motion in a gregarious vertebrate, PLOS ONE, vol.6, issue.1, pp.1-8, 2011. ,
Moving together: Incidental leaders and naïve followers, Behavioural Processes, vol.83, issue.3, pp.235-241, 2010. ,
Inhibition of long-term memory formation by anti-ependymin antisera after active shock-avoidance learning in goldfish, Brain Research, vol.442, issue.1, pp.53-62, 1988. ,
Vision in two cyprinid fish: Implications for collective behavior, PeerJ, vol.3, 1113. ,
Shoal size, patch profitability and information exchange in foraging goldfish, Animal Behaviour, vol.31, issue.2, pp.546-555, 1983. ,
Adaptive behaviour of herring schools in the Norwegian Sea as revealed by high-resolution sonar, ICES Journal of Marine Science: Journal du Conseil, vol.53, issue.2, pp.449-452, 1996. ,
Functions of shoaling behaviour in teleosts, The Behaviour of Teleost Fishes, pp.294-337, 1993. ,
Predator-avoidance behaviours of sand-eel schools: Why schools seldom split, in 'Predators and Prey in Fishes, pp.193-204, 1983. ,
Fish in larger shoals find food faster, Behavioral Ecology and Sociobiology, vol.10, issue.2, pp.149-151, 1982. ,
Analysis of fish and bioinspired robotic fish swimming together in a water tunnel, Proceedings of SPIE, vol.8686, p.868606, 2013. ,
Avoidance response in goldfish: Emotional and temporal involvement of medial and lateral telencephalic pallium, Journal of Neuroscience, vol.24, issue.9, pp.2335-2342, 2004. ,
Inhibition of memory consolidation by antibodies against cell adhesion molecules after active avoidance conditioning in zebrafish, Journal of Neurobiology, vol.39, issue.2, pp.197-206, 1999. ,
Propagating waves in starling, Sturnus vulgaris, flocks under predation, Animal Behaviour, vol.82, issue.4, pp.759-765, 2011. ,
, R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, 2016.
Schooling in the Ecology of Fish, 1973. ,
Diffusion of foraging innovations in the guppy, Animal Behaviour, vol.60, issue.2, pp.175-180, 2000. ,
Check List of the Freshwater Fishes of South and Central America, 2003. ,
Selforganization of fish schools: An object-oriented model, State-of-the-Art in Ecological Modelling proceedings of ISEM's 8th International Conference, vol.75, pp.147-159, 1994. ,
Genes and social behavior, Science, vol.322, issue.5903, pp.896-900, 2008. ,
Body size affects the strength of social interactions and spatial organization of a schooling fish, Royal Society Open Science, vol.4, issue.4, p.161056, 2017. ,
Revealing the hidden networks of interaction in mobile animal groups allows prediction of complex behavioral contagion, Proceedings of the National Academy of Sciences, vol.112, issue.15, pp.4690-4695, 2015. ,
The precise time course of retention, Journal of Experimental Psychology: Learning, Memory, and Cognition, vol.25, issue.5, p.1161, 1999. ,
The Principles of Humane Experimental Technique, 1959. ,
The effects of external cues on individual and collective behavior of shoaling fish, Science Advances, vol.3, issue.6, 2017. ,
Automated identification of social interaction criteria in Drosophila melanogaster, Biology Letters, vol.10, issue.10, 2014. ,
Schooling behavior in the guppy (poecilia reticulata): An evolutionary response to predation, Evolution, vol.28, issue.3, pp.486-489, 1974. ,
Schooling fishes: The school, a truly egalitarian form of organization in which all members of the group are alike in influence, offers substantial benefits to its participants, American Scientist, pp.166-175, 1978. ,
Highorder social interactions in groups of mice, p.759, 2013. ,
The difference between the perception of absolute and relative motion: A reaction time study, Vision Research, vol.34, issue.2, pp.191-195, 1994. ,
Individual behavior and emergent properties of fish schools: A comparison of observation and theory, Marine Ecology Progress Series, vol.273, pp.239-249, 2004. ,
Shared decision-making drives collective movement in wild baboons, Science, vol.348, issue.6241, pp.1358-1361, 2015. ,
Visual sensory networks and effective information transfer in animal groups, Current Biology, vol.23, issue.17, pp.709-711, 2013. ,
Collective motion from local attraction, Journal of Theoretical Biology, vol.283, issue.1, pp.145-151, 2011. ,
The shape and dynamics of local attraction, The European Physical Journal Special Topics, vol.224, issue.17, pp.3311-3323, 2015. ,
Information transfer in moving animal groups, Theory in Biosciences, vol.127, issue.2, pp.177-186, 2008. ,
, Collective Animal Behavior, 2010.
Quorum responses and consensus decision making, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.364, pp.743-753, 1518. ,
The modelling cycle for collective animal behaviour, Interface Focus, vol.2, issue.6, pp.764-773, 2012. ,
Sedimentation, trapping, and rectification of dilute bacteria, Europhysics Letters), vol.86, issue.6, p.60002, 2009. ,
Vergleichende untersuchungen an der nase der fische, Zeitschrift für Morphologie undÖkologie der Tiere, vol.43, issue.2, pp.171-212, 1954. ,
Dynamic clustering in active colloidal suspensions with chemical signaling, Phys. Rev. Lett, vol.108, issue.26, p.268303, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01628778
Swarming behavior of simple model squirmers, New Journal of Physics, vol.13, issue.7, p.73021, 2011. ,
Imitation combined with a characteristic stimulus duration results in robust collective decision-making, PLOS ONE, vol.10, issue.10, p.140188, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01254155
Group transmission of predator avoidance behaviour in a marine insect: The Trafalgar effect, Animal Behaviour, vol.29, issue.3, pp.911-917, 1981. ,
Collective states, multistability and transitional behavior in schooling fish, PLoS Computational Biology, vol.9, issue.2, p.1002915, 2013. ,
Attack abatement: A model for group protection by combined avoidance and dilution, American Naturalist, pp.228-240, 1986. ,
Novel type of phase transition in a system of self-driven particles, Phys. Rev. Lett, vol.75, issue.6, pp.1226-1229, 1995. ,
Energetic advantages of burst-and-coast swimming of fish at high speeds, Journal of Experimental Biology, vol.97, issue.1, pp.169-178, 1982. ,
Filling an emulsion drop with motile bacteria, Phys. Rev. Lett, vol.113, issue.26, p.268101, 2014. ,
, Janus particles', Soft Matter, vol.4, issue.4, pp.663-668, 2008.
Quantifying and tracing information cascades in swarms, PLoS ONE, vol.7, issue.7, p.40084, 2012. ,
Quorum decision-making facilitates information transfer in fish shoals, Proceedings of the National Academy of Sciences, vol.105, pp.6948-6953, 2008. ,
The effects of habitat-and diet-based cues on association preferences in three-spined sticklebacks, Behavioral Ecology, vol.15, issue.6, pp.925-929, 2004. ,
Quorum decision-making in foraging fish shoals, PLoS ONE, vol.7, issue.3, p.32411, 2012. ,
Local interactions and global properties of wild, free-ranging stickleback shoals, Royal Society Open Science, vol.4, issue.7, 2017. ,
Turbidity and foraging rate in threespine sticklebacks: The importance of visual and chemical prey cues, Behaviour, vol.144, issue.11, pp.1347-1360, 2007. ,
Energetic advantages of burst swimming of fish, Journal of Theoretical Biology, vol.48, issue.1, pp.215-229, 1974. ,
Modeling collective animal behavior with a cognitive perspective: A methodological framework, PLoS ONE, vol.7, issue.6, p.38588, 2012. ,
Single-trace fragility theory of memory dynamics, Memory & Cognition, vol.2, issue.4, pp.775-780, 1974. ,
Pavlovian analysis of avoidance conditioning in the goldfish (Carassius auratus), Journal of Comparative and physiological Psychology, vol.82, issue.1, p.123, 1973. ,
Active avoidance conditioning in zebrafish (Danio rerio), Neurobiology of Learning and Memory, vol.87, issue.1, pp.72-77, 2007. ,
Behavior pattern (innate action) of individuals in fish schools generating efficient collective evasion from predation, Journal of Theoretical Biology, vol.235, issue.2, pp.153-167, 2005. ,
Evolution of integrated causal structures in animats exposed to environments of increasing complexity, PLOS Computational Biology, vol.10, issue.12, pp.1-19, 2014. ,
Information transfer and behavioural inertia in starling flocks, Nature physics, vol.10, issue.9, pp.691-696, 2014. ,
Emergence of collective changes in travel direction of starling flocks from individual birds' fluctuations, Journal of The Royal Society Interface, vol.12, issue.108, 2015. ,
Collective behaviour without collective order in wild swarms of midges, PLoS Comput Biol, vol.10, issue.7, pp.1-10, 2014. ,
Information flows in causal networks, Advances in complex systems, vol.11, pp.17-41, 2008. ,
Interaction ruling animal collective behavior depends on topological rather than metric distance: Evidence from a field study, Proceedings of the National Academy of Sciences, vol.105, issue.4, pp.1232-1237, 2008. ,
Granger causality and transfer entropy are equivalent for gaussian variables, Physical Review Letters, vol.103, issue.23, p.238701, 2009. ,
Transfer Entropy as a Log-Likelihood Ratio, Physical Review Letters, vol.109, p.16, 2012. ,
Information flow in a kinetic ising model peaks in the disordered phase, Physical Review Letters, vol.111, issue.17, p.177203, 2013. ,
Controlling the false discovery rate: A practical and powerful approach to multiple testing, Journal of the Royal Statistical Society. Series B (Methodological), vol.57, issue.1, pp.289-300, 1995. ,
Statistical mechanics for natural flocks of birds, Proceedings of the National Academy of Sciences, vol.109, issue.13, pp.4786-4791, 2012. ,
Information processing in echo state networks at the edge of chaos, Theory in Biosciences, vol.131, issue.3, pp.205-213, 2012. ,
Swarm intelligence: from natural to artificial systems, 1999. ,
From disorder to order in marching locusts, Science, issue.5778, pp.1402-1406, 2006. ,
Mechanisms underpinning aggregation and collective movement by insect groups. Current Opinion in Insect Science, Pests and resistance * Behavioural ecology, vol.15, pp.125-130, 2016. ,
Group structure in locust migratory bands, Behavioral Ecology and Sociobiology, vol.65, issue.2, pp.265-273, 2010. ,
Information flow in animalrobot interactions, Entropy, vol.16, issue.3, pp.1315-1330, 2014. ,
Model-free information-theoretic approach to infer leadership in pairs of zebrafish, Physical Review E, vol.93, issue.4, p.42411, 2016. ,
Boundary information inflow enhances correlation in flocking, Physical review letters, vol.110, issue.16, p.168107, 2013. ,
Diffusion of individual birds in starling flocks, In Proc. R. Soc. B, vol.280, p.20122484, 2013. ,
When two become one: The limits of causality analysis of brain dynamics, PLoS ONE, vol.7, issue.3, p.32466, 2012. ,
Quantifying long-range interactions and coherent structure in multi-agent dynamics, Artificial Life, vol.23, issue.1, pp.34-57, 2017. ,
Collective cognition in animal groups, Trends in Cognitive Sciences, vol.13, issue.1, p.17, 2009. ,
Elements of Information Theory, 2006. ,
Information-based detection of nonlinear Granger causality in multivariate processes via a nonuniform embedding technique, Physical Review E, vol.83, p.51112, 2011. ,
Conditional Entropy-Based evaluation of information dynamics in physiological systems, Directed Information Measures in Neuroscience, Understanding Complex Systems, p.61 ,
Transmission of information: A statistical theory of communications, 1961. ,
The organization of intrinsic computation: Complexity-entropy diagrams and the diversity of natural information processing, Chaos: An Interdisciplinary Journal of Nonlinear Science, vol.18, issue.4, p.43106, 2008. ,
Ant traffic rules, The Journal of Experimental Biology, vol.213, issue.14, pp.2357-2363, 2010. ,
Deciphering interactions in moving animal groups, PLoS Comput Biol, vol.8, issue.9, pp.1-11, 2012. ,
Measurement of linear dependence and feedback between multiple time series, Journal of the American Statistical Association, vol.77, issue.378, pp.304-313, 1982. ,
Intermittent collective dynamics emerge from conflicting imperatives in sheep herds, Proceedings of the National Academy of Sciences, vol.112, issue.41, pp.12729-12734, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01293038
Reduced predictable information in brain signals in autism spectrum disorder, Frontiers in Neuroinformatics, vol.8, p.3924322, 2014. ,
Initiation and spread of escape waves within animal groups, Royal Society open science, vol.2, issue.4, p.140355, 2015. ,
Inferring the rules of interaction of shoaling fish, Proceedings of the National Academy of Sciences, vol.108, issue.46, pp.18726-18731, 2011. ,
Inferring the structure and dynamics of interactions in schooling fish, Proceedings of the National Academy of Sciences, vol.108, issue.46, p.18, 2011. ,
Acute caffeine administration affects zebrafish response to a robotic stimulus, Behavioural brain research, vol.289, pp.48-54, 2015. ,
Computation at the edge of chaos: phase transitions and emergent computation, Physica D, vol.42, issue.1-3, pp.12-37, 1990. ,
The symmetric derivative, Transactions of the American Mathematical Society, vol.277, issue.2, pp.589-599, 1983. ,
Differentiating information transfer and causal effect, The European Physical Journal B, vol.73, issue.4, pp.605-615, 2010. ,
The Local Information Dynamics of Distributed Computation in Complex Systems, 2013. ,
JIDT: An information-theoretic toolkit for studying the dynamics of complex systems, Frontiers in Robotics and AI, vol.1, p.11, 2014. ,
Measuring the dynamics of information processing on a local scale in time and space, Directed Information Measures in Neuroscience, Understanding Complex Systems, pp.161-193, 2014. ,
Multivariate information-theoretic measures reveal directed information structure and task relevant changes in fMRI connectivity, Journal of Computational Neuroscience, vol.30, issue.1, pp.85-107, 2011. ,
Information dynamics in smallworld boolean networks, Artificial Life, vol.17, issue.4, pp.293-314, 2011. ,
Local information transfer as a spatiotemporal filter for complex systems, Physical Review E, vol.77, issue.2, p.26110, 2008. ,
Information modification and particle collisions in distributed computation, Chaos, vol.20, issue.3, p.37109, 2010. ,
Local measures of information storage in complex distributed computation, Information Sciences, vol.208, pp.39-54, 2012. ,
A framework for the local information dynamics of distributed computation in complex systems, Emergence, Complexity and Computation, vol.9, pp.115-158, 2014. ,
Multivariate construction of effective computational networks from observational data, Max Planck Institute for Mathematics in the Sciences, p.19, 2012. ,
Inference of causal information flow in collective animal behavior, IEEE Transactions on Molecular, Biological and Multi-Scale Communications, vol.2, issue.1, pp.107-116, 2016. ,
Multi-scale inference of interaction rules in animal groups using bayesian model selection, PLoS Comput Biol, vol.9, issue.3, p.1002961, 2013. ,
Causal information approach to partial conditioning in multivariate data sets, Computational and Mathematical Methods in Medicine, p.303601, 2012. ,
Flight formations in geese and other birds, Nature, vol.282, pp.778-780, 1979. ,
Hierarchical group dynamics in pigeon flocks, Nature, vol.464, issue.7290, pp.890-893, 2010. ,
Context-dependent hierarchies in pigeons, Proceedings of the National Academy of Sciences, vol.110, issue.32, pp.13049-13054, 2013. ,
A transfer entropy analysis of leader-follower interactions in flying bats, The European Physical Journal Special Topics, vol.224, issue.17, pp.3279-3293, 2015. ,
Formation flight of birds, Science, vol.168, issue.3934, pp.1003-1005, 1970. ,
Self-organized fish schools: an examination of emergent properties, The biological bulletin, vol.202, issue.3, pp.296-305, 2002. ,
The effect of school size on the structure and dynamics of minnow schools, Animal Behaviour, vol.28, issue.1, pp.68-71, 1980. ,
idtracker: tracking individuals in a group by automatic identification of unmarked animals, Nature methods, vol.11, issue.7, pp.743-748, 2014. ,
The chorus-line hypothesis of manoeuvre coordination in avian flocks, Nature, vol.309, issue.5966, pp.344-345, 1984. ,
Propagating waves in starling, sturnus vulgaris, flocks under predation, Animal Behaviour, vol.82, issue.4, pp.759-765, 2011. ,
Relating Fisher information to order parameters, Physical Review E, vol.84, issue.4, p.41116, 2011. ,
Markov models from data by simple nonlinear time series predictors in delay embedding spaces, Phys. Rev. E, vol.65, p.56201, 1920. ,
Flocks, herds and schools: A distributed behavioral model, SIGGRAPH '87 Proceedings of the 14th Annual Conference on Computer Graphics and Interactive Techniques, vol.21, pp.25-34, 1987. ,
, Dynamical coupling during collective animal motion, 2013.
Multidimensional psychophysics and selective attention in animals, Psychological Bulletin, vol.83, issue.1, p.138, 1976. ,
Revealing the hidden networks of interaction in mobile animal groups allows prediction of complex behavioral contagion, Proceedings of the National Academy of Sciences, vol.112, issue.15, pp.4690-4695, 2015. ,
Measuring information transfer, Physical Review Letters, vol.85, issue.2, pp.461-464, 2000. ,
Spurious causalities with transfer entropy, Phys. Rev. E, vol.87, p.42917, 2013. ,
Expanding the transfer entropy to identify information circuits in complex systems, Physical Review E, vol.86, issue.6, p.66211, 2012. ,
Information transfer in moving animal groups, Theory in Biosciences, vol.127, issue.2, pp.177-186, 2008. ,
Information transfer in a swarm of soldier crabs, Artificial Life and Robotics, pp.1-4, 2016. ,
Confounding effects of indirect connections on causality estimation, Journal of Neuroscience Methods, vol.184, issue.1, pp.152-160, 2009. ,
Transfer entropy-a modelfree measure of effective connectivity for the neurosciences, Journal of Computational Neuroscience, vol.30, issue.1, pp.45-67, 2011. ,
Quantifying and tracing information cascades in swarms, PLoS ONE, vol.7, issue.7, p.40084, 2012. ,
Bits from brains for biologicallyinspired computing, Frontiers in Robotics and AI, vol.2, issue.5, 2015. ,
Measuring information-transfer delays, PLoS ONE, vol.8, issue.2, p.55809, 2013. ,
Transfer entropy in neuroscience, Directed Information Measures in Neuroscience, Understanding Complex Systems, pp.3-36, 2014. ,
Generalized measures of information transfer, 2011. ,
Collective motion, Physics Reports, vol.517, issue.3, pp.71-140, 2012. ,
A simulation study on the schoolng mechanism in fish, Bull Japan Soc Sci Fish, vol.48, 1982. ,
Flocks, herds and schools: A distributed behavioral model, ACM SIGGRAPH computer graphics, vol.21, issue.4, pp.25-34, 1987. ,
The simulation of the movement of fish schools, Journal of theoretical biology, vol.156, issue.3, pp.80681-80683, 1992. ,
Self-organizing dynamic model of fish schooling, Journal of theoretical Biology, vol.171, issue.2, pp.123-136, 1994. ,
Novel type of phase transition in a system of self-driven particles, Physical review letters, vol.75, issue.6, p.10060237, 1995. ,
Collective memory and spatial sorting in animal groups, Journal of theoretical biology, vol.218, issue.1, p.12297066, 2002. ,
Multi-camera real-time three-dimensional tracking of multiple flying animals, Journal of The Royal Society Interface, 2010. ,
, Identifying influential neighbors in animal flocking, PLOS Computational Biology, 201730-11-21.
Automated 3D trajectory measuring of large numbers of moving particles, Optics express, vol.19, issue.8, p.21503074, 2011. ,
idTracker: tracking individuals in a group by automatic identification of unmarked animals, Nature methods, vol.11, issue.7, p.24880877, 2014. ,
Inferring the structure and dynamics of interactions in schooling fish, Proceedings of the National Academy of Sciences, vol.108, issue.46, pp.18720-18725, 2011. ,
Inferring the rules of interaction of shoaling fish, Proceedings of the National Academy of Sciences, vol.108, issue.46, pp.18726-18731, 2011. ,
Deciphering interactions in moving animal groups, PLoS Comput Biol, vol.8, issue.9, p.23028277, 2012. ,
A jump persistent turning walker to model zebrafish locomotion, Journal of The Royal Society Interface, vol.12, issue.102, 2014. ,
Disentangling and modeling interactions in fish with burst-and-coast swimming ,
URL : https://hal.archives-ouvertes.fr/hal-01743510
From behavioural analyses to models of collective motion in fish schools. Interface focus, p.24312723, 2012. ,
Relevance of metric-free interactions in flocking phenomena, Physical Review Letters, vol.105, issue.16, p.21231019, 2010. ,
Collective motion in animal groups from a neurobiological perspective: the adaptive benefits of dynamic sensory loads and selective attention, Journal of theoretical biology, vol.261, issue.4, p.19699212, 2009. ,
Motion-guided attention promotes adaptive communications during social navigation, Proceedings of the Royal Society of London B: Biological Sciences, vol.280, 1754. ,
A stochastic vision-based model inspired by zebrafish collective behaviour in heterogeneous environments, Royal Society open science, vol.3, issue.1, p.26909173, 2016. ,
Laboratory determination of startle reaction time of the starling (Sturnus vulgaris), Animal Behaviour, vol.25, pp.720-725, 1977. ,
Reaction time and stimulus frequency in prey localization in the surface-feeding fish Aplocheilus lineatus, Journal of comparative physiology, vol.140, issue.2, pp.163-172, 1980. ,
Hierarchical group dynamics in pigeon flocks, Nature, vol.464, issue.7290, p.20376149, 2010. ,
Context-dependent hierarchies in pigeons, Proceedings of the National Academy of Sciences, vol.110, issue.32, pp.13049-13054, 2013. ,
Visual analytics of delays and interaction in movement data, International Journal of Geographical Information Science, 2016. ,
, , pp.1-26
Delayed response and biosonar perception explain movement coordination in trawling bats, PLoS Comput Biol, vol.11, issue.3, p.25811627, 2015. ,
Do fish count? Spontaneous discrimination of quantity in female mosquitofish, J]. Animal cognition, vol.11, issue.3, p.18247068, 2008. ,
Domino-like propagation of collective U-turns in fish schools ,
The role of individuality in collective group movement, Proc. R. Soc. B, vol.280, p.23222452, 1752. ,
, Identifying influential neighbors in animal flocking, PLOS Computational Biology, vol.31, p.32, 2017.
Exact dynamics of stochastic linear delayed systems: Application to spatiotemporal coordination of comoving agents, Phys. Rev. E, vol.90, issue.4, p.42135, 2014. ,
Flocking algorithm for autonomous flying robots, Bioinspiration & biomimetics, vol.9, issue.2, p.25012, 2014. ,
Group navigation and the "many-wrongs principle" in models of animal movement, Ecology, vol.88, issue.7, p.17645033, 2007. ,
Fast and accurate decisions through collective vigilance in fish shoals, Proceedings of the National Academy of Sciences, vol.108, issue.6, pp.2312-2315, 2011. ,
Emergent sensing of complex environments by mobile animal groups, Science, vol.339, issue.6119, p.23372013, 2013. ,
Visual sensory networks and effective information transfer in animal groups, Current Biology, vol.23, issue.17, p.24028946, 2013. ,
A common rule for decision making in animal collectives across species, Proceedings of the National Academy of Sciences, vol.109, issue.50, pp.20508-20513, 2012. ,
Limited interactions in flocks: relating model simulations to empirical data, Journal of The Royal Society Interface, 2010. ,
Spatially balanced topological interaction grants optimal cohesion in flocking models. Interface focus, vol.2, p.24312725, 2012. ,
Interaction ruling animal collective behavior depends on topological rather than metric distance: evidence from a field study, Proceedings of the National Academy of Sciences, vol.105, issue.4, pp.1232-1237, 2008. ,
Two visual mechanisms underlying the behavior of fish, Psychologische Forschung, vol.31, issue.1, p.5605116, 1967. ,
Role of vision in fish behaviour, The behaviour of Teleost fishes, pp.75-113, 1986. ,
PMID: 870603 Identifying influential neighbors in animal flocking, Journal of Experimental Biology, vol.66, issue.1, p.32, 1977. ,