Domain decomposition for implicit solvation models - Inria - Institut national de recherche en sciences et technologies du numérique Access content directly
Journal Articles The Journal of Chemical Physics Year : 2013

Domain decomposition for implicit solvation models

Abstract

This article is the first of a series of papers dealing with domain decomposition algorithms for implicit solvent models. We show that, in the framework of the COSMO model, with van der Waals molecular cavities and classical charge distributions, the electrostatic energy contribution to the solvation energy, usually computed by solving an integral equation on the whole surface of the molecular cavity, can be computed more efficiently by using an integral equation formulation of Schwarz's domain decomposition method for boundary value problems. In addition, the so-obtained potential energy surface is smooth, which is a critical property to perform geometry optimization and molecular dynamics simulations. The purpose of this first article is to detail the methodology, set up the theoretical foundations of the approach, and study the accuracies and convergence rates of the resulting algorithms. The full efficiency of the method and its applicability to large molecular systems of biological interest is demonstrated elsewhere.
Fichier principal
Vignette du fichier
cances_maday_stamm_DD_COSMO.pdf (833.97 Ko) Télécharger le fichier
Origin : Files produced by the author(s)
Loading...

Dates and versions

hal-00916139 , version 1 (09-12-2013)

Identifiers

Cite

Eric Cancès, Yvon Maday, Benjamin Stamm. Domain decomposition for implicit solvation models. The Journal of Chemical Physics, 2013, 139, pp.054111. ⟨10.1063/1.4816767⟩. ⟨hal-00916139⟩
468 View
545 Download

Altmetric

Share

Gmail Facebook X LinkedIn More