inria-00179078, version 1
GridR: An R-based grid-enabled tool for data analysis in ACGT clinico-genomics trials
Dennis Wegener 1Thierry Sengstag 2, 3Stelios Sfakianakis 4Stefan Rüping 1Anthony Assi a, 5
3rd IEEE International Conference on e-Science and Grid Computing (2007)
Résumé : In this paper, we describe an analysis tool based on the statistical environment R, GridR, which allows using the collection of methodologies available as R packages in a grid environment. The aim of GridR, which was initiated in the context of the EU project Advancing Clinico-Genomics Trials on Cancer (ACGT), is to provide a powerful framework for the analysis of clinico-genomic trials involving large amount of data (e.g. microarray-based clinical trials). As a proof of concept, an example of microarray-based analysis taken from the literature was reproduced using GridR. As GridR will ultimately be made available to the ACGT community as a web service, we are sketching the ACGT project and its architecture in the present article as well.
- a – INRIA
- 1 : Fraunhofer IAIS
- Fraunhofer IAIS
- 2 : Swiss Institute of Bioinformatics - Lausanne (SIB)
- Swiss Institute of Bioinformatics
- 3 : Swiss Institute for Experimental Cancer Research - Lausanne (ISREC)
- Swiss Institute for Experimental Cancer Research
- 4 : Biomedical Informatics Laboratory
- Foundation for Research & Technolgy - Hellas
- 5 : SYMBIOSE (INRIA - IRISA)
- CNRS : UMR6074 – INRIA – INSA Rennes – Université de Rennes 1
- Domaine : Informatique/Bio-informatique
Sciences du Vivant/Bio-Informatique, Biologie Systémique
- inria-00179078, version 1
- http://hal.inria.fr/inria-00179078
- oai:hal.inria.fr:inria-00179078
- Contributeur : Anthony Assi
- Soumis le : Samedi 12 Janvier 2008, 07:00:02
- Dernière modification le : Vendredi 21 Mai 2010, 14:06:16






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