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Prediction of super-secondary structure in α-helical and β-barrel transmembrane proteins

Thuong van Du Tran 1, 2 Philippe Chassignet 2 Jean-Marc Steyaert 1, 2
1 AMIB - Algorithms and Models for Integrative Biology
LIX - Laboratoire d'informatique de l'École polytechnique [Palaiseau], LRI - Laboratoire de Recherche en Informatique, UP11 - Université Paris-Sud - Paris 11, Inria Saclay - Ile de France
Abstract : A dynamic programming algorithm is proposed to predict the structure of different families of proteins and is tested with the b-barrel transmembrane proteins.
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https://hal.inria.fr/hal-00781437
Contributor : Mireille Regnier <>
Submitted on : Saturday, January 26, 2013 - 5:53:56 PM
Last modification on : Wednesday, September 16, 2020 - 5:08:21 PM

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Thuong van Du Tran, Philippe Chassignet, Jean-Marc Steyaert. Prediction of super-secondary structure in α-helical and β-barrel transmembrane proteins. BMC Bioinformatics, BioMed Central, 2009, 2009 (10 (Suppl. 13)), ⟨10.1186/1471-2105-10-S13-O3⟩. ⟨hal-00781437⟩

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