MINIA on a Raspberry Pi, Assembling a 100 Mbp Genome on a Credit Card Sized Computer

Guillaume Collet 1 Guillaume Rizk 2 Rayan Chikhi 3 Dominique Lavenier 3
1 Dyliss - Dynamics, Logics and Inference for biological Systems and Sequences
Inria Rennes – Bretagne Atlantique , IRISA-D7 - GESTION DES DONNÉES ET DE LA CONNAISSANCE
3 GenScale - Scalable, Optimized and Parallel Algorithms for Genomics
Inria Rennes – Bretagne Atlantique , IRISA-D7 - GESTION DES DONNÉES ET DE LA CONNAISSANCE
Abstract : This work shows that the genome assembly program MINIA is able to assemble a 100 Mbp genome on a Raspberry Pi. The MINIA software was developed to drastically reduce the memory footprint needed for genome assembly, enabling human genome to be assembled on a desktop computer. Here we show that it is also able to successfully assemble a genome on a very low-end, low-power system with 512 MB RAM and a 32 GB flash drive.
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https://hal.inria.fr/hal-00842027
Contributor : Guillaume Collet <>
Submitted on : Saturday, July 6, 2013 - 12:19:46 PM
Last modification on : Friday, November 16, 2018 - 1:39:30 AM
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Guillaume Collet, Guillaume Rizk, Rayan Chikhi, Dominique Lavenier. MINIA on a Raspberry Pi, Assembling a 100 Mbp Genome on a Credit Card Sized Computer. JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France. 2013. ⟨hal-00842027⟩

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