MINIA on a Raspberry Pi, Assembling a 100 Mbp Genome on a Credit Card Sized Computer - Archive ouverte HAL Access content directly
Documents Associated With Scientific Events Year : 2013

MINIA on a Raspberry Pi, Assembling a 100 Mbp Genome on a Credit Card Sized Computer

(1) , (2) , (3) , (3)
1
2
3

Abstract

This work shows that the genome assembly program MINIA is able to assemble a 100 Mbp genome on a Raspberry Pi. The MINIA software was developed to drastically reduce the memory footprint needed for genome assembly, enabling human genome to be assembled on a desktop computer. Here we show that it is also able to successfully assemble a genome on a very low-end, low-power system with 512 MB RAM and a 32 GB flash drive.
Fichier principal
Vignette du fichier
13_Jobim.pdf (5.25 Mo) Télécharger le fichier
Origin : Files produced by the author(s)

Dates and versions

hal-00842027 , version 1 (06-07-2013)

Identifiers

  • HAL Id : hal-00842027 , version 1

Cite

Guillaume Collet, Guillaume Rizk, Rayan Chikhi, Dominique Lavenier. MINIA on a Raspberry Pi, Assembling a 100 Mbp Genome on a Credit Card Sized Computer. JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France. 2013. ⟨hal-00842027⟩
778 View
990 Download

Share

Gmail Facebook Twitter LinkedIn More