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Evaluation of long read error correction software

Abstract : This report compares several read error correction software that use 3rd generation sequencing technology (long reads). The experimentations have been performed on several reference genomes and the results evaluated with QUAST. The long read error correctors that have been evaluated are: LSC-2, Proovread, Ectools, Lordec, Nanocorr, Nas, Jabba, Pacbiotoca, Lorma et MHAP. The first 8 software can merge long and short reads, while the last 3 software use only long reads.
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Contributor : Dominique Lavenier Connect in order to contact the contributor
Submitted on : Thursday, February 9, 2017 - 4:59:01 PM
Last modification on : Wednesday, November 3, 2021 - 8:09:37 AM


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  • HAL Id : hal-01463694, version 1


Laurent Bouri, Dominique Lavenier. Evaluation of long read error correction software. [Research Report] RR-9028, INRIA Rennes - Bretagne Atlantique; GenScale. 2017. ⟨hal-01463694⟩



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