Stability of Metabolic Networks via Linear-In-Flux-Expressions

Abstract : The methodology named LIFE (Linear-in-Flux Expressions) was developed with the purpose of simulating and analyzing large metabolic systems. With LIFE, the number of model parameters is reduced by accounting for correlations among the parameters of the system. Perturbation analysis on LIFE systems results in less overall variability of the system, leading to results that more closely resemble empirical data. These systems can be associated to graphs, and characteristics of the graph give insight into the dynamics of the system. This work addresses two main problems: 1. for fixed metabolite levels, find all fluxes for which the metabolite levels are an equilibrium, and 2. for fixed fluxes, find all metabolite levels which are equilibria for the system. We characterize the set of solutions for both problems, and show general results relating stability of systems to the structure of the associated graph. We show that there is a structure of the graph necessary for stable dynamics. Along with these general results, we show how stability analysis from the fields of network flows, compartmental systems, control theory and Markov chains apply to LIFE systems.
Document type :
Journal articles
Complete list of metadatas

Cited literature [24 references]  Display  Hide  Download

https://hal.inria.fr/hal-02088450
Contributor : Federica Garin <>
Submitted on : Tuesday, April 2, 2019 - 8:26:20 PM
Last modification on : Friday, April 12, 2019 - 12:10:22 PM
Long-term archiving on : Wednesday, July 3, 2019 - 5:45:15 PM

File

STABILITY_OF_METABOLIC_NETWORK...
Files produced by the author(s)

Identifiers

Collections

Citation

Nathaniel Merrill, Zheming An, Sean Mc Quade, Federica Garin, Karim Azer, et al.. Stability of Metabolic Networks via Linear-In-Flux-Expressions. Networks and Heterogeneous Media, AIMS-American Institute of Mathematical Sciences, 2019, 4 (1), pp.101-130. ⟨10.3934/nhm.2019006⟩. ⟨hal-02088450⟩

Share

Metrics

Record views

47

Files downloads

59