A Generic Solution for Automated Collecting and Integration of Biological Data from Web Sources

Marie-Dominique Devignes 1 Yvan Norsa 1 Malika Smaïl-Tabbone 1 Philippe Collet 2 Lionel Domenjoud 2 Michel Dauça 2
1 ORPAILLEUR - Knowledge representation, reasonning
INRIA Lorraine, LORIA - Laboratoire Lorrain de Recherche en Informatique et ses Applications
2 UHP - Université Henri Poincaré - Nancy 1
Abstract : We present here a work dealing with automated collecting and integration of data along a user-defined scenario. Aspects such as query construction, query submission, parsing of returned document, filtering of desired data and storing them in a structured document have been considered as well as the chaining between the various steps of the scenario. Automation of the process allows to refresh the data in a time-saving manner in order to take into account the frequent changes in source contents. A configuration module distinct from the execution module allows to modify the scenario steps according to user preferences and/or source changes.
Mots-clés : intégration de sources de données hétérogènes xml structured document integration of heterogeneous databases source multiplicity web genomic sources génomique scénario xml
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Marie-Dominique Devignes, Yvan Norsa, Malika Smaïl-Tabbone, Philippe Collet, Lionel Domenjoud, et al.. A Generic Solution for Automated Collecting and Integration of Biological Data from Web Sources. European Conference on Computational Biology - ECCB'03, Sep 2003, Paris, France. pp.2, 2003. 〈inria-00107665〉

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