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Reports (Research Report) Year : 2008

Parallel Reconfigurable Operator for Genomic Sequence Comparison: Architecture and Performance Analyses

Abstract

This document describes a parallel genomic sequence comparison operator for reconfigurable platforms. It has been implemented for speeding up the time consuming parts of the IRISA-TBLASTN program designed for comparing full genomes with large protein banks. Speed-up ranging from 25 to 200 has been measured on real genomic data.

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Hardware Architecture [cs.AR]
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Dominique Lavenier  : Connect in order to contact the contributor

https://inria.hal.science/inria-00348482

Submitted on : Tuesday, December 23, 2008-9:15:12 AM

Last modification on : Friday, March 24, 2023-2:52:51 PM

Long-term archiving on: Tuesday, June 8, 2010-4:44:21 PM

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inria-00348482 , version 1 (23-12-2008)

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  • HAL Id : inria-00348482 , version 1

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Alexandre Cornu, Francois Dussaugey, Dominique Lavenier. Parallel Reconfigurable Operator for Genomic Sequence Comparison: Architecture and Performance Analyses. [Research Report] RR-6776, INRIA. 2008. ⟨inria-00348482⟩

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EC-PARIS UNIV-RENNES1 CNRS INRIA INSA-RENNES IRISA INRIA-RRRT IRISA-D7 INRIA2 LARA UR1-MATH-STIC UR1-UFR-ISTIC UNIV-RENNES INSA-GROUPE ANR UR1-MATH-NUM
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