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Journal Articles Nucleic Acids Research Year : 2008

LocalMove: computing on-lattice fits for biopolymers

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R. Istrate
  • Function : Author
E. Porcelli
  • Function : Author
Peter Clote
  • Function : Author
  • PersonId : 862805

Abstract

Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The web server implements a Markov Chain Monte-Carlo algorithm with simulated annealing to compute an approximate fit for either the coarse-grain model or backbone model on either the cubic or face-centered cubic lattice. LocalMove returns a PDB file as output, as well as dynamic movie of 3D images of intermediate conformations during the computation. The LocalMove server is publicly available at http://bioinformatics.bc.edu/clotelab/localmove/.

Dates and versions

inria-00548867 , version 1 (20-12-2010)

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Cite

Yann Ponty, R. Istrate, E. Porcelli, Peter Clote. LocalMove: computing on-lattice fits for biopolymers. Nucleic Acids Research, 2008, 36 (2), pp.W216-W222. ⟨10.1093/nar/gkn367⟩. ⟨inria-00548867⟩
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