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Draft genome and description of Negativicoccus massiliensis strain Marseille-P2082, a new species isolated from the gut microbiota of an obese patient

Abstract : Strain Marseille-P2082, an anaerobic, non-motile, asporogenous, Gram-negative, coccoid bacterium was isolated from the faeces of a 33 year-old obese French woman before bariatric surgery. The isolate exhibits 98.65% 16S rRNA gene nucleotide sequence similarity with Negativicoccus succinicivorans strain ADV 07/08/06-B-1388(T), its current closest phylogenetic neighbour with standing in nomenclature. However, the dDDH relatedness between the new isolate and N. succinicivorans type strain ADV 07/08/06-B-1388(T) is 52.5 +/- 2.7%. Strain Marseille-P2082 has a genome of 1,360,589 bp with a 51.1% G+C content. Its major fatty acids were identified as C-18:1n9, C-18:0 and C-16:0. Based on its phenotypic, genomic and phylogenetic characteristics, strain Marseille-P2082(T) [= CSURP2082 (Collection de Souches de l'Unite des Rickettsies) = DSM 100853] is proposed as the type strain of the novel species Negativicoccus massiliensis sp. nov. The 16S rRNA gene sequence and whole-genome shotgun sequence have been deposited in EMBL-EBI under accession numbers LN876651 and LT700188, respectively.
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https://hal.archives-ouvertes.fr/hal-03149954
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Submitted on : Thursday, May 13, 2021 - 11:03:28 AM
Last modification on : Tuesday, May 25, 2021 - 5:44:51 PM

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Amadou Hamidou Togo, Awa Diop, Mamadou Lamine Tall, Matthieu Million, Saber Khelaifia, et al.. Draft genome and description of Negativicoccus massiliensis strain Marseille-P2082, a new species isolated from the gut microbiota of an obese patient. Antonie van Leeuwenhoek, Springer Verlag, 2020, 113 (7), pp.997-1008. ⟨10.1007/s10482-020-01414-5⟩. ⟨hal-03149954⟩

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