HAL will be down for maintenance from Friday, June 10 at 4pm through Monday, June 13 at 9am. More information
Skip to Main content Skip to Navigation
Journal articles

Mapping sequences by parts

Gilles Didier 1 Carito Guziolowski 2
2 SYMBIOSE - Biological systems and models, bioinformatics and sequences
IRISA - Institut de Recherche en Informatique et Systèmes Aléatoires, Inria Rennes – Bretagne Atlantique
Abstract : We present the N-map method, a pairwise and asymmetrical approach which allows us to compare sequences by taking into account evolutionary events that produce shuffled, reversed or repeated elements. Basically, the optimal N-map of a sequence s over a sequence t is the best way of partitioning the first sequence into N parts and placing them, possibly complementary reversed, over the second sequence in order to maximize the sum of their gapless alignment scores.
Document type :
Journal articles
Complete list of metadata

https://hal.inria.fr/inria-00180004
Contributor : Carito Guziolowski Connect in order to contact the contributor
Submitted on : Wednesday, October 17, 2007 - 2:11:46 PM
Last modification on : Friday, February 4, 2022 - 3:23:15 AM

Links full text

Identifiers

Citation

Gilles Didier, Carito Guziolowski. Mapping sequences by parts. Algorithms for Molecular Biology, BioMed Central, 2007, 2, pp.11. ⟨10.1186/1748-7188-2-11⟩. ⟨inria-00180004⟩

Share

Metrics

Record views

68