Mapping sequences by parts

Gilles Didier 1 Carito Guziolowski 2
2 SYMBIOSE - Biological systems and models, bioinformatics and sequences
IRISA - Institut de Recherche en Informatique et Systèmes Aléatoires, Inria Rennes – Bretagne Atlantique
Abstract : We present the N-map method, a pairwise and asymmetrical approach which allows us to compare sequences by taking into account evolutionary events that produce shuffled, reversed or repeated elements. Basically, the optimal N-map of a sequence s over a sequence t is the best way of partitioning the first sequence into N parts and placing them, possibly complementary reversed, over the second sequence in order to maximize the sum of their gapless alignment scores.
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Article dans une revue
Algorithms for Molecular Biology, BioMed Central, 2007, 2, pp.11. 〈10.1186/1748-7188-2-11〉
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https://hal.inria.fr/inria-00180004
Contributeur : Carito Guziolowski <>
Soumis le : mercredi 17 octobre 2007 - 14:11:46
Dernière modification le : mercredi 10 octobre 2018 - 10:50:53

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Gilles Didier, Carito Guziolowski. Mapping sequences by parts. Algorithms for Molecular Biology, BioMed Central, 2007, 2, pp.11. 〈10.1186/1748-7188-2-11〉. 〈inria-00180004〉

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