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Artificial Intelligence Applications and Innovations AIAI 2012 International Workshops: AIAB, AIeIA, CISE, COPA, IIVC, ISQL, MHDW, and WADTMB Halkidiki, Greece, September 27-30, 2012, Part II |
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Conference papers
Parallel Implementation of the Wu-Manber Algorithm Using the OpenCL Framework
Abstract : One of the most significant issues of the computational biology is the multiple pattern matching for locating nucleotides and amino acid sequence patterns into biological databases. Sequential implementations for these processes have become inadequate, due to an increasing demand for more computational power. Graphic cards offer a high parallelism computational power improving the performance of applications. This paper evaluates the performance of the Wu-Manber algorithm implemented with the OpenCL framework, by presenting the running time of the experiments compared with the corresponding sequential time.
Cited literature [10 references]
https://hal.archives-ouvertes.fr/hal-01523087
Contributor : Hal Ifip <>
Submitted on : Tuesday, May 16, 2017 - 9:17:25 AM
Last modification on : Tuesday, January 5, 2021 - 5:20:02 PM
Long-term archiving on: : Friday, August 18, 2017 - 12:53:15 AM
Contributor : Hal Ifip <>
Submitted on : Tuesday, May 16, 2017 - 9:17:25 AM
Last modification on : Tuesday, January 5, 2021 - 5:20:02 PM
Long-term archiving on: : Friday, August 18, 2017 - 12:53:15 AM
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