An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea - Archive ouverte HAL

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Conference Papers Year : 2013

An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea

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Julien Diener

Function : Correspondent author
PersonId : 854339

Connectez-vous pour contacter l'auteur

Modeling plant morphogenesis at different scales, from genes to phenotype

Amélioration génétique et adaptation des plantes méditerranéennes et tropicales

Phillipe Nacry

Function : Author
PersonId : 746490
IdHAL : philippe-nacry
ORCID : 0000-0001-7766-4989
IdRef : 175389519

Biochimie et Physiologie Moléculaire des Plantes

Christophe Périn

Function : Author

Amélioration génétique et adaptation des plantes méditerranéennes et tropicales

Anne Diévart

Function : Author

Amélioration génétique et adaptation des plantes méditerranéennes et tropicales

Xavier Draye

Function : Author
PersonId : 866185

Earth and Life Institute [Louvain-La-Neuve]

Frédéric Boudon

Function : Author
PersonId : 741150
IdHAL : fredboudon
ORCID : 0000-0001-9636-3102
IdRef : 083274111

Modeling plant morphogenesis at different scales, from genes to phenotype

Amélioration génétique et adaptation des plantes méditerranéennes et tropicales

Alain Gojon

Function : Author

Biochimie et Physiologie Moléculaire des Plantes

Bertrand Muller

Function : Author
PersonId : 736705
IdHAL : bertrand-muller
ORCID : 0000-0001-6387-9460
IdRef : 158638441

Écophysiologie des Plantes sous Stress environnementaux

Christophe Pradal

Function : Author
PersonId : 18071
IdHAL : christophe-pradal
ORCID : 0000-0002-2555-761X
IdRef : 241326397

Modeling plant morphogenesis at different scales, from genes to phenotype

Amélioration génétique et adaptation des plantes méditerranéennes et tropicales

Christophe Godin

Function : Author
PersonId : 1509
IdHAL : christophe-godin
ORCID : 0000-0002-1202-8460
IdRef : 100750958

Modeling plant morphogenesis at different scales, from genes to phenotype

Abstract

FSPM analysis of root systems requires structural data obtained on large data set. This paper describes a processing pipeline developed to extract automatically the architecture of root system from images databases.

Keywords

Root architecture Image processing Analysis pipeline High-throughput OpenAlea

Domains

Computer Science [cs] Modeling and Simulation

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https://hal.inria.fr/hal-00850814

Submitted on : Thursday, August 8, 2013-5:39:40 PM

Last modification on : Tuesday, February 7, 2023-2:44:49 PM

Long-term archiving on: Wednesday, April 5, 2017-8:25:48 PM

Dates and versions

hal-00850814 , version 1 (08-08-2013)

Identifiers

HAL Id : hal-00850814 , version 1
PRODINRA : 385945

Cite

Julien Diener, Phillipe Nacry, Christophe Périn, Anne Diévart, Xavier Draye, et al.. An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.85-87. ⟨hal-00850814⟩

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