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Morphological plant modeling: Unleashing geometric and topologic potential within the plant sciences
Alexander Bucksch
1
Acheampong Atta-Boateng
2
Akomian Fortune Azihou
3
Mathilde Balduzzi
4
Dorjsuren Battogtokh
5
Aly Baumgartner
6
Brad Binder
7
Siobhan Braybrook
8
Cynthia Chang
9
Viktoriya Coneva
10
Thomas Dewitt
11
Alexander Fletcher
12
Malia Gehan
10
Diego Hernan Diaz Martinez
13
Lilan Hong
14
Anjali Iyer-Pascuzzi
15
Laura Klein
16
Samuel Leiboff
14
Mao Li
13
Jonathan Lynch
17
Alexis Maizel
18
Julin Maloof
19
Rj Cody Markelz
20
Ciera Martinez
16
Laura Miller
21
Washington Mio
13
Wojtek Palubicki
8
Hendrik Poorter
22
Christophe Pradal
4
Charles Price
23
Eetu Puttonen
24
John Reese
7
Ruben Rellan-Alvarez
25
Edgar Spalding
26
Erin Sparks
27
Chris Topp
10
Joseph Williams
7
Daniel Chitwood
10
4
VIRTUAL PLANTS - Modeling plant morphogenesis at different scales, from genes to phenotype
CRISAM - Inria Sophia Antipolis - Méditerranée , INRA - Institut National de la Recherche Agronomique, UMR AGAP - Amélioration génétique et adaptation des plantes méditerranéennes et tropicales
Alexander Bucksch 1
Author
Acheampong Atta-Boateng 2
Author
Akomian Fortune Azihou 3
Author
Mathilde Balduzzi 4
Author
Dorjsuren Battogtokh 5
Author
Aly Baumgartner 6
Author
Brad Binder 7
Author
Siobhan Braybrook 8
Author
Cynthia Chang 9
Author
Viktoriya Coneva 10
Author
Thomas Dewitt 11
Author
Alexander Fletcher 12
Author
Malia Gehan 10
Author
Diego Hernan Diaz Martinez 13
Author
Lilan Hong 14
Author
Anjali Iyer-Pascuzzi 15
Author
Christophe Pradal 4
Author Employer institution : Centre de Coopération Internationale en Recherche Agronomique pour le Développement IdHAL : christophe-pradal ORCID : https://orcid.org/0000-0002-2555-761X
Charles Price 23
Author
Eetu Puttonen 24
Author
John Reese 7
Author
Joseph Williams 7
Author
Daniel Chitwood 10
Author
1
University of Georgia [USA] (Athens, GA 30602 - United States)
2
Yale University [New Haven] (157 Church Street, New Haven, CT 06510-2100 - United States)
4
VIRTUAL PLANTS - Modeling plant morphogenesis at different scales, from genes to phenotype (INRIA project-team Virtual Plants, joint with CIRAD and INRA UMR AGAP C.C. 06002 95, rue de la Galéra, 34095 Montpellier Cedex 5, France - France)
- CRISAM - Inria Sophia Antipolis - Méditerranée (2004 route des Lucioles BP 93 06902 Sophia Antipolis - France)
- Inria - Institut National de Recherche en Informatique et en Automatique (Domaine de Voluceau Rocquencourt - BP 105 78153 Le Chesnay Cedex - France)
- INRA - Institut National de la Recherche Agronomique (France)
- UMR AGAP - Amélioration génétique et adaptation des plantes méditerranéennes et tropicales (TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 France - France)
- Cirad - Centre de Coopération Internationale en Recherche Agronomique pour le Développement : UMR108 (Siège 42, rue Scheffer 75116 Paris - France)
- INRA - Institut National de la Recherche Agronomique : UMR1334 (France)
- Montpellier SupAgro - Centre international d'études supérieures en sciences agronomiques (2, place Pierre Viala - 34060 Montpellier Cedex 02 - France)
- Montpellier SupAgro - Institut national d’études supérieures agronomiques de Montpellier (2, place Viala 34060 Montpellier Cédex 2 - France)
5
Virginia Tech [Blacksburg] (Virginia Polytechnic Institute and State University Blacksburg, VA 24061-0002 - United States)
6
Baylor University (1301 S University Parks Dr, Waco, TX 76706, États-Unis - United States)
7
The University of Tennessee [Knoxville] ( Knoxville, Tennessee 37996 - United States)
8
SLCU - Sainsbury Laboratory Cambridge University (University of Cambridge, Bateman Street, Cambridge, CB2 1LR, United Kingdom - United Kingdom)
- CAM - University of Cambridge [UK] (The Old Schools, Trinity Lane, Cambridge CB2 1TN - United Kingdom)
9
University of Washington-Bothell (18115 Campus Way NE, Bothell, WA 98011-8246 - United States)
10
Donald Danforth Plant Science Center (United States)
- Donald Danforth Plant Science Center (France)
11
Department of Wildlife & Fisheries Sciences, Department of Plant Pathology & Microbiology (United States)
- Texas A&M University [College Station] (College Station, TX 77843 - United States)
12
SoMaS - School of Mathematics and Statistics [Sheffield] (University of Sheffield Hicks Building Hounsfield Road Sheffield S3 7RH - United Kingdom)
- University of Sheffield [Sheffield] (Western Bank Sheffield S10 2TN - United Kingdom)
13
FSU - Florida State University [Tallahassee] (600 W College Ave, Tallahassee, FL 32306 - United States)
14
Cornell University [New York] ( Ithaca, New York 14853 - United States)
15
Department of Botany and Plant Pathology (United States)
- Purdue University [West Lafayette] (Hovde Hall, 610 Purdue Mall, West Lafayette, IN 47907 - United States)
17
Penn State - Pennsylvania State University (201 Old Main, University Park, Pennsylvania 16802 - United States)
- Penn State System (Pennsylvania, PA, USA, Etats-Unis - United States)
18
Center for Organismal Studies (Germany)
- Universität Heidelberg [Heidelberg] ( Seminarstraße 2, 69117 Heidelberg - Germany)
19
University of California Davis - Department of Plant Biology (United States)
- University of California (United States)
20
Department of Molecular & Cell Biology [Berkeley] (University of California, Berkeley Dept. of Molecular & Cell Biology 142 LSA #3200 Berkeley, CA 94720-3200 - United States)
- University of California [Berkeley] (Berkeley, CA - United States)
- University of California (United States)
21
UNC - University of North Carolina [Chapel Hill] (250 East Franklin Street, Chapel Hill, NC, - United States)
- UNC - University of North Carolina System (United States)
24
FGI - Finnish Geospatial Research Institute (Geodeetinrinne 2, FI-02430 Masala - Finland)
25
CINVESTAV - Centro de Investigacion y de Estudios Avanzados del Instituto Politécnico Nacional (Avenida Politécnico Nacional 2508 Mexico-D.F. 07360 - Mexico)
26
University of Wisconsin-Madison (Madison, WI 53706 - United States)
27
Duke University [Durham] (Durham, NC 27708 - United States)
Abstract : Plant morphology is inherently mathematical. The geometries of leaves and flowers and intricate topologies of the root have fascinated plant biologists and mathematicians alike. Beyond providing aesthetic inspiration, understanding plant morphology has become pressing in an era of climate change and a growing population. Gaining an understanding of how to modify plant architecture through molecular biology and breeding is critical to improving agriculture, and the monitoring of ecosystems and global vegetation is vital to modeling a future with fewer natural resources. In this white paper, we begin by summarizing the rich history and state of the art in quantifying the form of plants, mathematical models of patterning in plants, and how plant morphology manifests dynamically across disparate scales of biological organization. We then explore the fundamental challenges that remain unanswered concerning plant morphology, from the barriers preventing the prediction of phenotype from genotype to modeling the fluttering of leaves in a light breeze. We end with a discussion concerning the education of plant morphology synthesizing biological and mathematical approaches and ways to facilitate research advances through outreach, cross-disciplinary training, and open science. Never has the need to model plant morphology been more imperative. Unleashing the potential of geometric and topological approaches in the plant sciences promises to transform our understanding of both plants and mathematics.
Document type :
Preprints, Working Papers, ...
Domain :
Complete list of metadata
https://hal.inria.fr/hal-01412691
Contributor : Christophe Godin Connect in order to contact the contributor
Submitted on : Thursday, December 8, 2016 - 4:08:24 PM
Last modification on : Saturday, January 22, 2022 - 3:07:59 AM
Long-term archiving on: : Thursday, March 23, 2017 - 8:01:02 AM
Contributor : Christophe Godin Connect in order to contact the contributor
Submitted on : Thursday, December 8, 2016 - 4:08:24 PM
Last modification on : Saturday, January 22, 2022 - 3:07:59 AM
Long-term archiving on: : Thursday, March 23, 2017 - 8:01:02 AM
File
078832.full.pdf
Files produced by the author(s)
Licence
Distributed under a Creative Commons Attribution - NonCommercial 4.0 International License
Identifiers
- HAL Id : hal-01412691, version 1
- DOI : 10.1101/078832
Collections
INRA | TDS-MACS | INRIA | CIRAD | AGROPOLIS | MONTPELLIER-SUPAGRO | INRAE | INRAEOCCITANIEMONTPELLIER
Citation
Alexander Bucksch, Acheampong Atta-Boateng, Akomian Fortune Azihou, Mathilde Balduzzi, Dorjsuren Battogtokh, et al.. Morphological plant modeling: Unleashing geometric and topologic potential within the plant sciences. 2016. ⟨hal-01412691⟩
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