Logol : Modelling evolving sequence families through a dedicated constrained string language

Catherine Belleannée 1 Jacques Nicolas 1
1 SYMBIOSE - Biological systems and models, bioinformatics and sequences
IRISA - Institut de Recherche en Informatique et Systèmes Aléatoires, Inria Rennes – Bretagne Atlantique
Abstract : The report reviews the key milestones that have been reached so far in applying formal languages to the analysis of genomic sequences. Then it introduces a new modelling language, Logol, that aims at expressing more easily complex structures on genomic sequences. It is based on a development of String Variable Grammars, a formal framework proposed by D. Searls.
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https://hal.inria.fr/inria-00186568
Contributor : Catherine Belleannée <>
Submitted on : Friday, November 9, 2007 - 5:27:11 PM
Last modification on : Thursday, November 15, 2018 - 11:57:19 AM
Long-term archiving on : Monday, September 24, 2012 - 3:05:44 PM

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  • HAL Id : inria-00186568, version 1

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Catherine Belleannée, Jacques Nicolas. Logol : Modelling evolving sequence families through a dedicated constrained string language. [Research Report] 2007, pp.19. ⟨inria-00186568v1⟩

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